[R-sig-phylo] Problems with as.phylo.treeshape (library apTreeshape)

Dear list. I am having problems with as.phylo.treeshape. The command gives the error Error in edge[current.line, ] = c(tmp$ancestor, -tree$merge[tmp$node, : subscript out of bounds The error can be replicated with this code and tree. I am running R 2.15, APE 3.0-6 and apTreeshape 1.4-4

[R-sig-phylo] Reverting or setting axis label in plottet phylo tree

Hi everybody, just a quick question: -- is it possible to revert the scale on the axis added to a tree plotted with plot(phyloobject)? -- is it possible to manually set the axis tick locations and labels? Thanks a lot, best Jana [[alternative HTML version deleted]]

Re: [R-sig-phylo] Reverting or setting axis label in plottet phylo tree

Hi Jana, Jarecki, Jana wrote on 24/10/2012 20:01: Hi everybody, just a quick question: -- is it possible to revert the scale on the axis added to a tree plotted with plot(phyloobject)? No, but instead of axisPhylo() you may use axis(1). -- is it possible to manually set the axis tick