Hi Daniel,
Have you looked at the help page of dist.dna? The list of references there is
focused on calculating distances but some are general. There are a few more
references in my book too. I suggest you also look at Inferring Phylogenies.
Best,
Emmanuel
-Original Message-
From:
Hi Jingchun,
Yes in this case I'd use the true model. The LRT may be not very powerful
with your data.
Cheers,
Emmanuel
-Original Message-
From: Jingchun Li jingc...@umich.edu
Date: Fri, 5 Apr 2013 10:25:57
To: emmanuel.para...@ird.fr
Cc: r-sig-phylo@r-project.org
Subject: Re:
Emmanuel Paradis answered Daniel Barker's inquiry:
Is there a review or list of ~every specific nucleotide substitution model
that has been proposed or used in the literature (with references)?
Hi Daniel,
Have you looked at the help page of dist.dna? The list of references there is
Hello,
This is Elaine.
I want to calculate lambda based on a bird data and a polygeny tree, using
geiger.
However, an error message below jumped out.
I do not understand it quite well.
Please kindly help explain its meaning and advise any code modification to
calculate lambda.
(BTW, I found
