[R-sig-phylo] FW: tps format problem reading in R

2013-07-02 Thread John Denton
Hi folks, I'm trying to read a tps file in the geomorph v1.1-1 R package using readland.tps(file), but every time I try the above, I get the error Error in dimnames(coords)[[3]] - imageID : 'dimnames' must be a list In addition: Warning message: In readland.tps(Lter_mean.TPS) : NAs introduced

Re: [R-sig-phylo] compare.gee issues with multiple predictor models

2013-07-02 Thread Emmanuel Paradis
Hi Sandra, Le 01/07/2013 22:03, sandra goutte a écrit : Hello all, I am sorry if the question has already been answered, i have not found it int the archive. I am using compar.gee to look at possible correlations between behavioral traits and ecological variables. I have two problems: 1) if i

Re: [R-sig-phylo] Problems with write.nexus of the package ape

2013-07-02 Thread Emmanuel Paradis
Hi Agus, The problem is that spaces are ignored in Newick and NEXUS files. Maybe you do not need to replace _ for ? Best, Emmanuel Le 29/06/2013 15:15, Agus Camacho a écrit : Dear all, After correcting the names of a otherwise perfectly functional tree using gsub,