Re: [R-sig-phylo] Extended Majority Consensus Topology (Allcompat Summary) in R? And some observations on ape's consensus() function

Hi David, phangorn has the function consensusNet that builds consensus networks (objects of class "networx") which is more appropriate than ape::consensus is p < 0.5. There is a nice plotting function using RGL for "networx" objects. Of course, you won't get a fully bifurcating tree if there

Re: [R-sig-phylo] Extended Majority Consensus Topology (Allcompat Summary) in R? And some observations on ape's consensus() function

David Bapst asked: > > I was interested if anyone was familiar with R code that can estimate an > extended majority consensus tree (referred to as an 'allcompat' tree by the > sumt command in MrBayes)? This is a fully bifurcating summary of a tree > posterior, where each clade is maximally

[R-sig-phylo] Extended Majority Consensus Topology (Allcompat Summary) in R? And some observations on ape's consensus() function

Hi all, I was interested if anyone was familiar with R code that can estimate an extended majority consensus tree (referred to as an 'allcompat' tree by the sumt command in MrBayes)? This is a fully bifurcating summary of a tree posterior, where each clade is maximally resolved by the split that

Re: [R-sig-phylo] Partitioning of functional beta diversity

Hi Functional information has to be a dendrogram and not a trait matrix. just do: tree_funct <- hclust(dist(funct), "ave ») beta(sp, tree_funct) Best François Rigal > Le 26 oct. 2018 à 21:38, ' Salatiel Clemente a > écrit : > > Hello > I measured 11 morphological variables of 214 ant