Hi Alina.
Since you mentioned some functions of phytools, I thought it might be
helpful to describe what each function is actually doing:
1) The function ls.consensus computes a least-squares (LS) consensus
tree. This is the LS tree on the average patristic distance matrix of
the input trees,
Le 25/01/2019 à 00:14, Alina van dijk a écrit :
Hi everyone,
Thanks Emmanuel and Joseph for sharing your thoughts!
Emmanuel, today I tried multi2di and it works. But, if I understand
correctly, this function transforms the dichotomies with branches of
length zero. So for me, in fact, doesn't
Hi Alina,
I'm not entirely sure I understand the problem, but perhaps
phangorn::maxCladeCred() could help?
I have used at some point to summarize 100 posterior mammal trees, and got
a binary ultrametric tree. Note that my input trees were also fully binary
and ultrametric, so if your results may
