Re: [R-sig-phylo] Warning in ape::mst() in R 4.0

Hi Kelly, Thanks! This is fixed. Best, Emmanuel - Le 1 Juil 20, à 23:20, Kelly Street street.ke...@gmail.com a écrit : > Hello, > > Thank you for all your work developing and maintaining this great package! > This is likely a known issue already (and not a critical one), but since > the

[R-sig-phylo] Warning in ape::mst() in R 4.0

Hello, Thank you for all your work developing and maintaining this great package! This is likely a known issue already (and not a critical one), but since the update to matrices in R 4.0 (they now have class c("matrix", "array")), I have been getting warnings from ape::mst(). Specifically this:

[R-sig-phylo] Enumerating tree topologies

Dear Yan, Regarding the enumeration of tree topologies, John Tromp proposed a method for representing binary trees as a mixed-base number, used in Li et al. (1996, "Some notes on the nearest neighbour interchange distance"), which underpins the 'TreeTools' function `as.TreeNumber()`. Applying