in
the alignment file. I am working on rebuilding the network with the
sequences in a different order to see if the same topology is recovered.
Patrick
On Mar 29, 2011, at 10:28 AM, Patrick Flight wrote:
Hello r-sig-phylo,
I am using the haploNet command of the excellent pegas package
Hello r-sig-phylo,
I am using the haploNet command of the excellent pegas package to
construct an mtDNA haplotype network with 79 nodes. When I generate
the network I am able to identify the limits of parsimony from the
accompanying table. However, I don't quite understand why this network
, correlation=corPagel(1, tree))
summary(Intercept.model)
AIC=-1600.819
BIC=-1586.435
logLik=803.4093
lambda=0.6562463
lrtest(Intercept.model, Factor.model)
Intercept.model = 3 Df, 803.41 LogLik
Factor.model= 5 Df, 804.65 LogLik
ChiSq=2.4767, Df=2, p-value=0.2899
Patrick Flight
Doctoral Candidate
