Re: [R-sig-phylo] Cross Validation for PL in R

2011-07-23 Thread Frank Burbrink
Hi Emmanuel, I used your new chronopl code that you sent a few weeks back and I am not certain that it is functioning properly. While I realize that it won't give answers identical to r8s, the chronopl function still is pretty different. So, I have completed a number of tests where I generated

[R-sig-phylo] Cross Validation for PL in R

2011-07-06 Thread Frank Burbrink
Hello All, I have some large code that simulates gene trees from species trees and I need to automate the production of chronograms in R. I have used the chronopl function in Ape and can automate that just fine. However, I am at a loss as to how to get the cross validation procedure for

Re: [R-sig-phylo] Cross Validation for PL in R

2011-07-06 Thread Emmanuel Paradis
Hello Frank, Frank Burbrink wrote on 06/07/2011 21:06: Hello All, I have some large code that simulates gene trees from species trees and I need to automate the production of chronograms in R. I have used the chronopl function in Ape and can automate that just fine. However, I am at a loss