david.win...@gmail.com
Sender: r-sig-phylo-boun...@r-project.org
Date: Tue, 10 Dec 2013 12:47:39
To: Alastair Pottspott...@gmail.com
Cc: mailman, r-sig-phylor-sig-phylo@r-project.org
Subject: Re: [R-sig-phylo] Mismatch distribution (pegas): expected versus
empirical and other questions
Hi Alistair,
I
Hi all,
The mismatch distribution function in pegas (MMD) produces the familiar
histogram and then also a line that I always took as the theoretical
expected distribution under a scenario of constant population size.
I had a quick look at the MMD function and noticed that this line is not
Hi Alistair,
I wrote a function to make the standard expectation under constant
population size quite a while ago. It's up here
https://github.com/dwinter/Pegas/blob/new_functions/R/MMD.stable.R
It's been a little while since I've had to think about mismatch
distributions, so, though I'm sure
