[R-sig-phylo] adjacency matrix / edgelist from igraph into a phylo class

2014-05-12 Thread Wesley Goi
Hi all, I've search quite around for methods of converting from a edgelist (from igraph) to a phylo class taken from the 2006: Analysis of Phylogenetics and Evolution with R the instructions for building an object of the phylo class seems to have been changed. Please correct me if I'm

Re: [R-sig-phylo] adjacency matrix / edgelist from igraph into a phylo class

2014-05-12 Thread Emmanuel Paradis
Hi Wesley, You are right: this definition is out-dated. Have a look at: http://ape-package.ird.fr/ in the 'Development' section, there is a document explaining the structure of the class phylo. Also the second edition of APER has been updated on this point. Best, Emmanuel Le 12/05/2014