Hi folks,
I've run an analysis in PAUP, and 3 equally parsimonious trees were
returned. I can read in and plot the tree just fine. However, when I run
the consensus function, then R hangs. Any ideas as to the problem?
library(ape)
tree - read.nexus('HP.A.s1.h2.tree')
length(tree) # 3 trees
Hi Alastair,
Your trees are unrooted. Have you tried to root them first? I guess a
consensus on rooted trees is more meaningful too.
Emmanuel
Alastair Potts wrote on 09/03/2011 20:51:
Hi folks,
I've run an analysis in PAUP, and 3 equally parsimonious trees were
returned. I can read in and
Hi again,
I see that is.binary.tree() is FALSE for tree[[1]]. I think this must be
an error from PAUP. I assume that the consensus function requires all
trees to pass the is.binary.tree() test?
Cheers,
Alastair
-
Alastair
