Re: [R-sig-phylo] convergence in compar.gee (ape)

2014-08-14 Thread Emmanuel Paradis
Dear Sereina, The number of iterations is not output by default. You can modify the function with fix(compar.gee), find this line: geemod - do.call(gee, list(formula, and insert this command after it: cat(number of iterations:, geemod$iterations, \n) save and close. HTH

[R-sig-phylo] convergence in compar.gee (ape)

2014-08-12 Thread Sereina Graber
Dear list members, I have a question concerning the compar.gee function in ape. Often, the models dont converge, and now I would like to safe whether a model converged or not. Is there a way to somehow get the number of iterations reached the max number, or is there something like a convergence