Re: [R-sig-phylo] exporting nexus tree in APE

2012-05-15 Thread Emmanuel Paradis
Hi Lucinda, You don't give enough information allowing us to help you efficiently. However, see below. Lucinda Kirkpatrick wrote on 15/05/2012 07:38: Dear all, I am attempting to export a tree I have pruned from 916 taxa to the 53 taxa I am interested. I used this script: overlap-

[R-sig-phylo] exporting nexus tree in APE

2012-05-14 Thread Lucinda Kirkpatrick
Dear all, I am attempting to export a tree I have pruned from 916 taxa to the 53 taxa I am interested. I used this script: overlap - name.check(tree, d) tree - drop.tip(tree, overlap$Tree.not.data) d2 - d[!(rownames(d) %in% overlap$Data.not.tree),] plot(tree) name.check(tree,d2) That was