Re: [R-sig-phylo] Tree manipulations (pruning and grafting)

2009-10-08 Thread Emmanuel Paradis
Hi Sam, Sam Brown wrote on 06/10/2009 01:37: Dear all To prepare for SH tests between optimised and expected trees, I've been attempting to do tree manipulations in R. Pruning is easy with the dual functions of extract.clade() and drop.tip(), however grafting the clade into a different place

Re: [R-sig-phylo] Tree manipulations (pruning and grafting)

2009-10-07 Thread Jake Esselstyn
Hi Wayne, I just found myself hand editing constraint trees the other day. I would be happy to have this functionality and suspect I would use it regularly. Cheers, Jake Wayne Maddison wrote: This and the previous query about importing a phylogeny into R raises a question that was

Re: [R-sig-phylo] Tree manipulations (pruning and grafting)

2009-10-06 Thread Sam Brown
Hi Wayne That sounds like it would be ideal. I'd be keen to give it a whirl when it's ready. Would Mesquite need to be installed as well as R? Cheers Sam Date: Tue, 6 Oct 2009 09:10:42 -0700 From: wmadd...@interchange.ubc.ca Subject: Re: [R-sig-phylo] Tree manipulations (pruning

[R-sig-phylo] Tree manipulations (pruning and grafting)

2009-10-05 Thread Sam Brown
Dear all To prepare for SH tests between optimised and expected trees, I've been attempting to do tree manipulations in R. Pruning is easy with the dual functions of extract.clade() and drop.tip(), however grafting the clade into a different place using bind.tree() is proving much more