Hi all,
Does anybody know of a package that does character correlations between binary
and multistate characters (and even better with the possibility of missing
data)?
Thanks!
~John
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You can do this with corHMM by making an appropriate model with rayDISC.
For example, if character A has states 0,1 and character B has states
0,1,2, you then recode this into a single multistate character:
00 -> 0
01 -> 1
02 -> 2
10 -> 3
11 -> 4
12 -> 5
and then create a rate matrix that