ian O'Meara" <omeara.br...@gmail.com>
To: John Denton <jden...@amnh.org>
Cc: "r-sig-phylo@r-project.org" <r-sig-phylo@r-project.org>
Subject: Re: [R-sig-phylo] correlation of binary and multistate
Message-ID:
<cakywhkoayv28kqbfi_pxmtjehdpopfkfly2dakocfzucs4y.
You can do this with corHMM by making an appropriate model with rayDISC.
For example, if character A has states 0,1 and character B has states
0,1,2, you then recode this into a single multistate character:
00 -> 0
01 -> 1
02 -> 2
10 -> 3
11 -> 4
12 -> 5
and then create a rate matrix that
