r27962 - /trunk/specific_analyses/frame_order/api.py

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 16:10:43 2015 New Revision: 27962 URL: http://svn.gna.org/viewcvs/relax?rev=27962=rev Log: Fix for the merger of the frame_order_cleanup branch. The specific_analyses.frame_order.api module now matches that of the branch. Modified:

r27961 - in /trunk: pipe_control/pymol_control.py specific_analyses/frame_order/uf.py

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 16:09:25 2015 New Revision: 27961 URL: http://svn.gna.org/viewcvs/relax?rev=27961=rev Log: Fix for the merger of the frame_order_cleanup branch. The pipe_control.pipes.check_pipe() function is being incorrectly used, but now matches that of the

r27965 - in /trunk/test_suite: shared_data/frame_order/cam/double_rotor/ shared_data/frame_order/cam/double_rotor_large_angl...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 16:25:54 2015 New Revision: 27965 URL: http://svn.gna.org/viewcvs/relax?rev=27965=rev Log: Fix for the merger of the frame_order_cleanup branch. The base CaM frame system test script, as well as th CaM frame order test data optimisation scripts scripts, had

r27943 - in /trunk: ./ test_suite/shared_data/frame_order/cam/iso_cone_free_rotor/ test_suite/shared_data/frame_order/cam/is...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 12:06:50 2015 New Revision: 27943 URL: http://svn.gna.org/viewcvs/relax?rev=27943=rev Log: Merged revisions 24560-24561,24585-24586,24666-24667 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r24560 | bugman |

r27946 - in /trunk: ./ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/rotor/ test_suite/shared_data/f...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 12:19:10 2015 New Revision: 27946 URL: http://svn.gna.org/viewcvs/relax?rev=27946=rev Log: Merged revisions 24731-24735,24754 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r24731 | bugman | 2014-07-24 18:53:53

r27948 - in /trunk: ./ auto_analyses/ lib/frame_order/ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 12:39:07 2015 New Revision: 27948 URL: http://svn.gna.org/viewcvs/relax?rev=27948=rev Log: Merged revisions 24819-24823,24832-24836 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r24819 | bugman | 2014-07-29

r27960 - /trunk/data_store/__init__.py

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 16:06:14 2015 New Revision: 27960 URL: http://svn.gna.org/viewcvs/relax?rev=27960=rev Log: Fix for the merger of the frame_order_cleanup branch. The data_store/__init__.py changes of r27769 were lost with the r27951 merge commit. Modified:

r27964 - /trunk/specific_analyses/frame_order/parameters.py

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 16:14:38 2015 New Revision: 27964 URL: http://svn.gna.org/viewcvs/relax?rev=27964=rev Log: Fix for the merger of the frame_order_cleanup branch. The assemble_scaling_matrix() function of the specific_analyses.frame_order.parameters module was deleted in the

r27963 - /trunk/specific_analyses/frame_order/optimisation.py

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 16:11:42 2015 New Revision: 27963 URL: http://svn.gna.org/viewcvs/relax?rev=27963=rev Log: Fix for the merger of the frame_order_cleanup branch. Removal of an unused import, to match the branch. Modified: trunk/specific_analyses/frame_order/optimisation.py

r27967 - /branches/frame_order_cleanup/

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 16:30:10 2015 New Revision: 27967 URL: http://svn.gna.org/viewcvs/relax?rev=27967=rev Log: Deletion of the frame_order_cleanup branch as it has been merged back into the trunk. Removed: branches/frame_order_cleanup/

r27958 - in /trunk: ./ pipe_control/ specific_analyses/frame_order/ test_suite/system_tests/ user_functions/

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 15:05:16 2015 New Revision: 27958 URL: http://svn.gna.org/viewcvs/relax?rev=27958=rev Log: Merged revisions 26896-26900,26908-26911 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r26896 | bugman | 2014-12-02

r27959 - in /trunk: ./ auto_analyses/ docs/latex/ docs/latex/frame_order/ docs/latex/images/ docs/latex/images/frame_order_m...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 15:10:10 2015 New Revision: 27959 URL: http://svn.gna.org/viewcvs/relax?rev=27959=rev Log: Merged revisions 26913-26920,26957,27240,27244,27329,27552,27609-27611,27641-27653,27663,27715,27721,27806,27878-27899,27912 via svnmerge from

r27966 - /trunk/

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 16:28:48 2015 New Revision: 27966 URL: http://svn.gna.org/viewcvs/relax?rev=27966=rev Log: Removed merge tracking for "svnmerge" for svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup Modified: trunk/ (props changed) Propchange: trunk/

r27951 - in /trunk: ./ auto_analyses/ data_store/ lib/frame_order/ lib/structure/ specific_analyses/frame_order/ target_func...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 13:54:25 2015 New Revision: 27951 URL: http://svn.gna.org/viewcvs/relax?rev=27951=rev Log: Merged revisions 25790-25792,25794-25799,25804-25809,25811-25845,25862-25896 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup

r27954 - in /trunk: ./ auto_analyses/ lib/frame_order/ specific_analyses/frame_order/ target_functions/ test_suite/shared_da...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 14:10:30 2015 New Revision: 27954 URL: http://svn.gna.org/viewcvs/relax?rev=27954=rev Log: Merged revisions 26015-26016,26019-26042,26047 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r26015 | bugman | 2014-09-24

r27955 - in /trunk: ./ auto_analyses/ specific_analyses/frame_order/ test_suite/shared_data/frame_order/pcs_information_cont...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 14:16:40 2015 New Revision: 27955 URL: http://svn.gna.org/viewcvs/relax?rev=27955=rev Log: Merged revisions 26083-26084,26086,26089-26092,26094,26138 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r26083 | bugman

r27956 - in /trunk: ./ auto_analyses/ lib/frame_order/ specific_analyses/frame_order/ target_functions/ test_suite/shared_da...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 14:24:34 2015 New Revision: 27956 URL: http://svn.gna.org/viewcvs/relax?rev=27956=rev Log: Merged revisions 26141,26207,26313-26320,26349,26365,26388-26394,26396-26477,26479-26481,26484,26534-26537,26657-26658,26668-26669 via svnmerge from

r27936 - in /trunk: ./ lib/frame_order/ target_functions/ test_suite/shared_data/frame_order/cam/ test_suite/shared_data/fra...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 10:49:41 2015 New Revision: 27936 URL: http://svn.gna.org/viewcvs/relax?rev=27936=rev Log: Merged revisions 23985,24015-24017,24090,24279,24284,24309-24314,24316-24318,24321-24322 via svnmerge from

r27944 - in /trunk: ./ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/rotor/

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 12:14:05 2015 New Revision: 27944 URL: http://svn.gna.org/viewcvs/relax?rev=27944=rev Log: Merged revisions 24709-24713 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r24709 | bugman | 2014-07-24 15:11:29 +0200

r27952 - in /trunk: ./ auto_analyses/ lib/frame_order/ specific_analyses/frame_order/ test_suite/system_tests/ test_suite/sy...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 13:56:22 2015 New Revision: 27952 URL: http://svn.gna.org/viewcvs/relax?rev=27952=rev Log: Merged revisions 25901,25905,25909,25918-25922,25926,25929-25931,25948-25956,25960-25961 via svnmerge from

r27937 - in /trunk: ./ lib/frame_order/ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/double_rotor_l...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 11:18:36 2015 New Revision: 27937 URL: http://svn.gna.org/viewcvs/relax?rev=27937=rev Log: Merged revisions 24327-24334,24344-24346 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r24327 | bugman | 2014-06-26

r27957 - in /trunk: ./ specific_analyses/frame_order/ test_suite/shared_data/frame_order/representation/ test_suite/system_t...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 14:27:40 2015 New Revision: 27957 URL: http://svn.gna.org/viewcvs/relax?rev=27957=rev Log: Merged revisions 26671,26673,26675-26678,26680,26683-26698,26717-26722,26764,26767,26773,26784,26789,26796-26797,26800-26802,26809 via svnmerge from

r27935 - in /trunk: ./ lib/frame_order/ specific_analyses/frame_order/ target_functions/ test_suite/shared_data/frame_order/...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 10:40:33 2015 New Revision: 27935 URL: http://svn.gna.org/viewcvs/relax?rev=27935=rev Log: Merged revisions 23935-23936,23943,23947-23948,23969-23983 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23935 | bugman

r27940 - in /trunk: ./ specific_analyses/frame_order/ target_functions/ test_suite/system_tests/ test_suite/system_tests/scr...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 11:44:49 2015 New Revision: 27940 URL: http://svn.gna.org/viewcvs/relax?rev=27940=rev Log: Merged revisions 24514-24520 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r24514 | bugman | 2014-07-10 18:12:07 +0200

r27938 - in /trunk: ./ lib/structure/internal/ lib/structure/represent/ pipe_control/ pipe_control/structure/ specific_analy...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 11:30:10 2015 New Revision: 27938 URL: http://svn.gna.org/viewcvs/relax?rev=27938=rev Log: Merged revisions 24352,24358,24366-24379,24385,24397,24402-24406,24409-24411 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup

r27945 - in /trunk: ./ specific_analyses/frame_order/ test_suite/system_tests/ test_suite/system_tests/scripts/frame_order/cam/

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 12:15:57 2015 New Revision: 27945 URL: http://svn.gna.org/viewcvs/relax?rev=27945=rev Log: Merged revisions 24715-24717 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r24715 | bugman | 2014-07-24 16:47:36 +0200

r27950 - in /trunk: ./ auto_analyses/ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/rotor/perm_iso_c...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 13:44:48 2015 New Revision: 27950 URL: http://svn.gna.org/viewcvs/relax?rev=27950=rev Log: Merged revisions 25713-25715,25720-25723,25725-25741,25744-25747,25749-25754,25760-25769 via svnmerge from

r27941 - in /trunk: ./ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/rotor/

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 11:57:33 2015 New Revision: 27941 URL: http://svn.gna.org/viewcvs/relax?rev=27941=rev Log: Merged revisions 24522-24524 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r24522 | bugman | 2014-07-11 10:46:21 +0200

r27942 - in /trunk: ./ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/free_rotor/ test_suite/shared_d...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 11:59:06 2015 New Revision: 27942 URL: http://svn.gna.org/viewcvs/relax?rev=27942=rev Log: Merged revisions 24530-24534,24538-24539 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r24530 | bugman | 2014-07-11

r27939 - in /trunk: ./ auto_analyses/ lib/frame_order/ lib/structure/ lib/structure/internal/ lib/structure/represent/ pipe_...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 11:41:42 2015 New Revision: 27939 URL: http://svn.gna.org/viewcvs/relax?rev=27939=rev Log: Merged revisions 24433-24436,24441-2,24449-24451,24455,24457-24459,24461-24499,24504,24506,24509 via svnmerge from

r27947 - in /trunk: ./ auto_analyses/ lib/frame_order/ specific_analyses/frame_order/ target_functions/ test_suite/shared_da...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 12:31:21 2015 New Revision: 27947 URL: http://svn.gna.org/viewcvs/relax?rev=27947=rev Log: Merged revisions 24778,24783-24784,24787,24798-24810,24814-24817 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r24778 |

r27949 - in /trunk: ./ auto_analyses/ specific_analyses/frame_order/ test_suite/shared_data/frame_order/axis_permutations/ t...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 13:41:38 2015 New Revision: 27949 URL: http://svn.gna.org/viewcvs/relax?rev=27949=rev Log: Merged revisions 24839-24840,25299-25301,25402,25416,25536-25537,25710-25711 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup

r27971 - /trunk/devel_scripts/find_unused_imports.py

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 17:38:52 2015 New Revision: 27971 URL: http://svn.gna.org/viewcvs/relax?rev=27971=rev Log: Removed the printout of pylint STDERR messages in the find_unused_imports.py developer script. Modified: trunk/devel_scripts/find_unused_imports.py Modified:

r27970 - /trunk/devel_scripts/find_unused_imports.py

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 17:37:54 2015 New Revision: 27970 URL: http://svn.gna.org/viewcvs/relax?rev=27970=rev Log: Removed a debugging printout. Modified: trunk/devel_scripts/find_unused_imports.py Modified: trunk/devel_scripts/find_unused_imports.py URL:

r27969 - /trunk/devel_scripts/find_unused_imports.py

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 17:37:26 2015 New Revision: 27969 URL: http://svn.gna.org/viewcvs/relax?rev=27969=rev Log: Fix for the error catching in the find_unused_imports.py developer script. The numerous pylint warnings are also sent to STDERR. Modified:

r27968 - /trunk/devel_scripts/find_unused_imports.py

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 17:03:27 2015 New Revision: 27968 URL: http://svn.gna.org/viewcvs/relax?rev=27968=rev Log: Added error catching to the find_unused_imports.py developer script. Modified: trunk/devel_scripts/find_unused_imports.py Modified:

r27972 - /trunk/devel_scripts/find_unused_imports.py

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 17:53:55 2015 New Revision: 27972 URL: http://svn.gna.org/viewcvs/relax?rev=27972=rev Log: Fix for the find_unused_imports.py script. The STDOUT lines need to be read before STDERR to avoid the script from freezing. Modified:

r27973 - /trunk/test_suite/shared_data/frame_order/timings/

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 18:09:00 2015 New Revision: 27973 URL: http://svn.gna.org/viewcvs/relax?rev=27973=rev Log: Elimination of a number of wildcard imports from some frame order timing scripts. This is to avoid excessive function imports. Modified:

r27974 - /trunk/user_functions/frame_order.py

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 18:09:40 2015 New Revision: 27974 URL: http://svn.gna.org/viewcvs/relax?rev=27974=rev Log: Removal of an unused import from the user_functions.frame_order module. Modified: trunk/user_functions/frame_order.py Modified: trunk/user_functions/frame_order.py

r27975 - /trunk/test_suite/shared_data/frame_order/simulation/

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 18:11:36 2015 New Revision: 27975 URL: http://svn.gna.org/viewcvs/relax?rev=27975=rev Log: Removal of unused imports from the test_suite/shared_data/frame_order/simulation scripts. Modified: trunk/test_suite/shared_data/frame_order/simulation/double_rotor.py

r27976 - in /trunk/test_suite/shared_data/frame_order/cam: rigid/rotor_analysis/frame_order.py rotor_small_angle/tensor_fit.py

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 20:09:41 2015 New Revision: 27976 URL: http://svn.gna.org/viewcvs/relax?rev=27976=rev Log: Updated some unused frame order scripts to use the new minimise user function design. Modified:

r27933 - in /trunk: ./ specific_analyses/frame_order/ test_suite/shared_data/frame_order/cam/ test_suite/shared_data/frame_o...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 09:18:46 2015 New Revision: 27933 URL: http://svn.gna.org/viewcvs/relax?rev=27933=rev Log: Merged revisions 23807-23812 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23807 | bugman | 2014-06-11 08:07:03 +0200

r27934 - in /trunk: ./ lib/frame_order/ specific_analyses/frame_order/ target_functions/ test_suite/shared_data/frame_order/...

2015-10-02 Thread edward
Author: bugman Date: Fri Oct 2 09:29:12 2015 New Revision: 27934 URL: http://svn.gna.org/viewcvs/relax?rev=27934=rev Log: Merged revisions 23856-23863,23878-23879,23883-23887 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/branches/frame_order_cleanup r23856 | bugman |