:39:20 2007
@@ -1,6 +1,7 @@
###
# #
# Copyright (C) 2004-2005 Edward d'Auvergne #
+# Copyright (C) 2007
Author: bugman
Date: Mon Jul 9 21:54:58 2007
New Revision: 3329
URL: http://svn.gna.org/viewcvs/relax?rev=3329view=rev
Log:
A few formatting fixes to the patch applied in the previous commit.
Modified:
branches/consistency_tests_1.2/specific_fns/consistency_tests.py
Modified:
Author: bugman
Date: Mon Jul 9 22:44:44 2007
New Revision: 3331
URL: http://svn.gna.org/viewcvs/relax?rev=3331view=rev
Log:
Application of Sebastien Morin's patch 'patch_sample_scripts_consistency_tests'.
See the thread starting at
https://mail.gna.org/public/relax-devel/2007-06/msg8.html
Author: bugman
Date: Mon Jul 9 22:48:18 2007
New Revision: 3332
URL: http://svn.gna.org/viewcvs/relax?rev=3332view=rev
Log:
Application of Sebastien Morin's patch 'patch_sample_scripts_consistency_tests'.
See the post located at
https://mail.gna.org/public/relax-devel/2007-07/msg00015.html for
Author: bugman
Date: Mon Jul 9 23:05:37 2007
New Revision: 3335
URL: http://svn.gna.org/viewcvs/relax?rev=3335view=rev
Log:
Removed the svnmerge property from the branch.
The 1.2 should be where the merges come from, hence the link to the 1.3 line
was removed using the
command:
svnmerge.py
Author: bugman
Date: Mon Jul 9 22:57:15 2007
New Revision:
URL: http://svn.gna.org/viewcvs/relax?rev=view=rev
Log:
Manually ported r3332 from the 1.2 line - the addition of Grace plotting to the
jw_mapping script.
The command used was:
svn merge -r3331:3332 svn+ssh://[EMAIL
Author: bugman
Date: Mon Jul 9 23:06:34 2007
New Revision: 3336
URL: http://svn.gna.org/viewcvs/relax?rev=3336view=rev
Log:
Initialised the svnmerge properties for merging 1.2 line changes.
The command used was:
svnmerge.py init -r 1-3319 svn+ssh://[EMAIL PROTECTED]/svn/relax/1.2
Modified:
Author: bugman
Date: Mon Jul 9 23:08:31 2007
New Revision: 3337
URL: http://svn.gna.org/viewcvs/relax?rev=3337view=rev
Log:
Merged revisions 3332 via svnmerge from
svn+ssh://[EMAIL PROTECTED]/svn/relax/1.2
r3332 | bugman | 2007-07-09 22:48:18 +0200 (Mon, 09 Jul 2007) | 6 lines
Author: bugman
Date: Mon Jul 9 23:09:14 2007
New Revision: 3338
URL: http://svn.gna.org/viewcvs/relax?rev=3338view=rev
Log:
Blocked revisions 3334 via svnmerge
r3334 | bugman | 2007-07-09 23:00:29 +0200 (Mon, 09 Jul 2007) | 22 lines
Blocked revisions via svnmerge
Author: bugman
Date: Tue Jul 10 19:43:27 2007
New Revision: 3339
URL: http://svn.gna.org/viewcvs/relax?rev=3339view=rev
Log:
Application of Sebastien Morin's 'patch__trailing_whitespace_good' patch.
The file 'dx/isosurface_3D.py' was excluded from the patch set just to be on
the safe side - the
Author: bugman
Date: Thu Jul 12 11:34:48 2007
New Revision: 3340
URL: http://svn.gna.org/viewcvs/relax?rev=3340view=rev
Log:
Application of Sebastien Morin's patch 'patch__indentation__r3339'.
See the post at https://mail.gna.org/public/relax-devel/2007-07/msg00030.html
for details.
This patch
@@
###
# #
# Copyright (C) 2004-2005 Edward d'Auvergne #
-# Copyright (C) 2007 Sebastien Morin sebastien.morin.1 at ulaval.ca
+# Copyright (C) 2007 Sebastien Morin sebastien.morin.1 at ulaval.ca
Author: bugman
Date: Tue Jul 17 18:42:08 2007
New Revision: 3342
URL: http://svn.gna.org/viewcvs/relax?rev=3342view=rev
Log:
Application of Sebastien Morin's 'patch__function_spacing__1.3_r3341' patch.
See the post at https://mail.gna.org/public/relax-devel/2007-07/msg00037.html
for the patch.
Author: bugman
Date: Sun Jul 22 18:07:13 2007
New Revision: 3343
URL: http://svn.gna.org/viewcvs/relax?rev=3343view=rev
Log:
Application of Seb's patch
'patch__specific_fns__jw_mapping__trailing_spaces__l1.2_r3342'.
The patch is attached to the post
Author: bugman
Date: Sun Jul 22 18:19:33 2007
New Revision: 3345
URL: http://svn.gna.org/viewcvs/relax?rev=3345view=rev
Log:
Fix for bug #9562 (http://gna.org/bugs/?9562).
This bug was reported and fixed by Sebastien Morin (sebastien dot morin dot 1
at ulaval dot ca) by
the patch
Author: bugman
Date: Sun Jul 22 18:25:39 2007
New Revision: 3346
URL: http://svn.gna.org/viewcvs/relax?rev=3346view=rev
Log:
Application of Seb's patch 'patch__empty_line_after_docstring__1.3_r3342'.
The patch is located at
https://mail.gna.org/public/relax-devel/2007-07/msg00047.html.
This
Author: bugman
Date: Sun Jul 22 18:31:17 2007
New Revision: 3347
URL: http://svn.gna.org/viewcvs/relax?rev=3347view=rev
Log:
Blocked revisions 3339-3340,3342 via svnmerge
r3339 | bugman | 2007-07-10 19:43:27 +0200 (Tue, 10 Jul 2007) | 7 lines
Application of Sebastien Morin's
Author: bugman
Date: Sun Jul 22 18:32:38 2007
New Revision: 3348
URL: http://svn.gna.org/viewcvs/relax?rev=3348view=rev
Log:
Merged revisions 3345 via svnmerge from
svn+ssh://[EMAIL PROTECTED]/svn/relax/1.3
r3345 | bugman | 2007-07-22 18:19:33 +0200 (Sun, 22 Jul 2007) | 10 lines
Author: bugman
Date: Sun Jul 22 18:33:35 2007
New Revision: 3349
URL: http://svn.gna.org/viewcvs/relax?rev=3349view=rev
Log:
Blocked revisions 3346 via svnmerge
r3346 | bugman | 2007-07-22 18:25:39 +0200 (Sun, 22 Jul 2007) | 10 lines
Application of Seb's patch
Author: bugman
Date: Sun Jul 22 18:40:53 2007
New Revision: 3350
URL: http://svn.gna.org/viewcvs/relax?rev=3350view=rev
Log:
Application of Seb's patch 'patch_consistency_tests__l1.2_r3342-1-a'.
The patch is located at
https://mail.gna.org/public/relax-devel/2007-07/msg00059.html.
The patch
Author: bugman
Date: Mon Aug 6 13:36:02 2007
New Revision: 3354
URL: http://svn.gna.org/viewcvs/relax?rev=3354view=rev
Log:
Application of Sebastien Morin's patch to convert all default CSA values to
-172 ppm.
For the patch, see the post at
Author: bugman
Date: Thu Aug 30 10:41:32 2007
New Revision: 3355
URL: http://svn.gna.org/viewcvs/relax?rev=3355view=rev
Log:
Fix for bug #9892 (https://gna.org/bugs/?9892).
This bug was reported by Douglas Kojetin douglas dot kojetin at gmail dot
com, and was first
discussed in the post
Author: bugman
Date: Thu Aug 30 10:42:37 2007
New Revision: 3356
URL: http://svn.gna.org/viewcvs/relax?rev=3356view=rev
Log:
Hand ported r3355 from the 1.3 line.
.
Fix for bug #9892 (https://gna.org/bugs/?9892).
This bug was reported by Douglas Kojetin douglas dot kojetin at gmail dot
Author: bugman
Date: Sun Oct 21 19:40:36 2007
New Revision: 3361
URL: http://svn.gna.org/viewcvs/relax?rev=3361view=rev
Log:
Updated the CHANGES file for relax version 1.2.11.
Modified:
tags/1.2.11/docs/CHANGES
Modified: tags/1.2.11/docs/CHANGES
URL:
Author: bugman
Date: Sun Oct 21 19:43:37 2007
New Revision: 3362
URL: http://svn.gna.org/viewcvs/relax?rev=3362view=rev
Log:
Ported r3360 from the 1.2.11 tag using the command:
svn merge -r3360:3361 svn+ssh://[EMAIL PROTECTED]/svn/relax/tags/1.2.11
.
r3361 | bugman | 2007-10-21 19:40:36
Author: bugman
Date: Sun Oct 21 21:09:07 2007
New Revision: 3364
URL: http://svn.gna.org/viewcvs/relax?rev=3364view=rev
Log:
Updated the download page to point to the new 1.2.11 relax release.
Only GNU/Linux and source packages have been release so far. The 'Old
releases' download page
section
Author: bugman
Date: Sun Oct 21 21:35:22 2007
New Revision: 3365
URL: http://svn.gna.org/viewcvs/relax?rev=3365view=rev
Log:
Changed the order of the GNU/Linux distribution packages so that the old
version 1.2.10 comes last.
Modified:
website/download.html
Modified: website/download.html
Author: bugman
Date: Sun Oct 21 22:13:14 2007
New Revision: 3367
URL: http://svn.gna.org/viewcvs/relax?rev=3367view=rev
Log:
Updated the API documentation to relax version 1.2.11.
Modified:
website/api/1.2/class-tree.html
website/api/1.2/colour-module.html
Author: bugman
Date: Sun Oct 21 22:54:32 2007
New Revision: 3368
URL: http://svn.gna.org/viewcvs/relax?rev=3368view=rev
Log:
A few fixes to the CHANGES file for version 1.2.11.
Modified:
1.2/docs/CHANGES
Modified: 1.2/docs/CHANGES
URL:
Author: bugman
Date: Sun Oct 21 23:00:02 2007
New Revision: 3369
URL: http://svn.gna.org/viewcvs/relax?rev=3369view=rev
Log:
Manually ported the changes to the CHANGES file for relax 1.2.11.
The command used was:
svn merge -r3361:3368 svn+ssh://[EMAIL PROTECTED]/svn/relax/1.2
.
r3368 |
Author: bugman
Date: Sun Oct 21 23:27:35 2007
New Revision: 3370
URL: http://svn.gna.org/viewcvs/relax?rev=3370view=rev
Log:
Added relax versions 1.0.0 to 1.2.9 to the 'Old releases' of the download page.
Modified:
website/download.html
Modified: website/download.html
URL:
Author: bugman
Date: Thu Oct 25 08:11:50 2007
New Revision: 3371
URL: http://svn.gna.org/viewcvs/relax?rev=3371view=rev
Log:
Modified the download page to include the 1.2.11 release for 32 bit i686
GNU/Linux.
Modified:
website/download.html
Modified: website/download.html
URL:
Author: bugman
Date: Thu Oct 25 10:09:20 2007
New Revision: 3372
URL: http://svn.gna.org/viewcvs/relax?rev=3372view=rev
Log:
Fix for bug #10189 (https://gna.org/bugs/?10189).
This bug was reported by Douglas Kojetin (douglas dot kojetin att gmail dot
com).
The problem was that the
Author: bugman
Date: Thu Oct 25 10:11:30 2007
New Revision: 3374
URL: http://svn.gna.org/viewcvs/relax?rev=3374view=rev
Log:
Merged revisions 3372 via svnmerge from
svn+ssh://[EMAIL PROTECTED]/svn/relax/1.3
r3372 | bugman | 2007-10-25 10:09:20 +0200 (Thu, 25 Oct 2007) | 8 lines
Author: bugman
Date: Thu Oct 25 22:46:05 2007
New Revision: 3375
URL: http://svn.gna.org/viewcvs/relax?rev=3375view=rev
Log:
Updated the download page for the 32 bit Windows version of relax 1.2.11.
Modified:
website/download.html
Modified: website/download.html
URL:
Author: bugman
Date: Fri Oct 26 18:32:16 2007
New Revision: 3378
URL: http://svn.gna.org/viewcvs/relax?rev=3378view=rev
Log:
Application of a patch by Seb that corrects a typo.
The patch 'patch_1.2-r3375_consistency_branch__typo' by Sebastien Morin
(sebastien dot morin dot 1
at ulaval dot ca)
Author: bugman
Date: Fri Oct 26 18:28:54 2007
New Revision: 3376
URL: http://svn.gna.org/viewcvs/relax?rev=3376view=rev
Log:
Application of a patch that changes the default CSA value so it's consistent
with the rest of relax.
The patch 'patch_1.2-r3375_consistency_branch__CSA' by Sebastien
Author: bugman
Date: Fri Oct 26 18:30:20 2007
New Revision: 3377
URL: http://svn.gna.org/viewcvs/relax?rev=3377view=rev
Log:
Application of a patch that complements information given to users on
consistency testing.
The patch 'patch_1.2-r3375_consistency_branch__docstring' by Sebastien Morin
Author: bugman
Date: Sun Oct 28 19:31:17 2007
New Revision: 3380
URL: http://svn.gna.org/viewcvs/relax?rev=3380view=rev
Log:
Removal of the 'error_import' branch.
This branch was merged back into the 1.3 line back at r3074, in 2007-03-04.
Removed:
branches/error_import/
Author: bugman
Date: Sun Oct 28 19:33:36 2007
New Revision: 3381
URL: http://svn.gna.org/viewcvs/relax?rev=3381view=rev
Log:
Removal of the 'tensor_pdb' branch which was merged back into the 1.3 line at
r2847 in 2006-11-15.
Removed:
branches/tensor_pdb/
Author: bugman
Date: Mon Oct 29 15:02:21 2007
New Revision: 3384
URL: http://svn.gna.org/viewcvs/relax?rev=3384view=rev
Log:
Added a unit test for renaming multiple residues simultaneously through
'residue.rename()'.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_residue.py
Author: bugman
Date: Sat Nov 3 14:09:28 2007
New Revision: 3387
URL: http://svn.gna.org/viewcvs/relax?rev=3387view=rev
Log:
Created the generic_fns.residue.rename() function and fixed the corresponding
unit tests.
Modified:
1.3/generic_fns/residue.py
Author: bugman
Date: Sat Nov 3 18:36:21 2007
New Revision: 3390
URL: http://svn.gna.org/viewcvs/relax?rev=3390view=rev
Log:
Alphabetical arrangement of the residue user functions.
Modified:
1.3/prompt/residue.py
Modified: 1.3/prompt/residue.py
URL:
Author: bugman
Date: Sat Nov 3 18:37:32 2007
New Revision: 3391
URL: http://svn.gna.org/viewcvs/relax?rev=3391view=rev
Log:
Spelling correction.
Modified:
1.3/generic_fns/residue.py
Modified: 1.3/generic_fns/residue.py
URL:
Author: bugman
Date: Sun Nov 4 13:15:18 2007
New Revision: 3395
URL: http://svn.gna.org/viewcvs/relax?rev=3395view=rev
Log:
Added another unit test for the generic_fns.selection.return_residue() function.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_selection.py
Modified:
Author: bugman
Date: Sun Nov 4 13:19:36 2007
New Revision: 3396
URL: http://svn.gna.org/viewcvs/relax?rev=3396view=rev
Log:
Added two unit tests for the generic_fns.selection.return_molecule() function.
Also made the function fail properly when no data pipe exists.
Modified:
Author: bugman
Date: Sun Nov 4 13:39:20 2007
New Revision: 3399
URL: http://svn.gna.org/viewcvs/relax?rev=3399view=rev
Log:
Renamed all instances of RelaxRunError with RelaxPipeError, and modified the
error message.
Modified:
1.3/data/__init__.py
1.3/generic_fns/pipes.py
Author: bugman
Date: Sun Nov 4 13:42:08 2007
New Revision: 3400
URL: http://svn.gna.org/viewcvs/relax?rev=3400view=rev
Log:
Replaced all mention of 'run' from the RelaxError system and replaced it with
'pipe'.
Modified:
1.3/relax_errors.py
Modified: 1.3/relax_errors.py
URL:
Author: bugman
Date: Sun Nov 4 13:51:00 2007
New Revision: 3401
URL: http://svn.gna.org/viewcvs/relax?rev=3401view=rev
Log:
Removed dud user functions from 'residue' which remained from the copy of
'sequence'.
Modified:
1.3/prompt/residue.py
Modified: 1.3/prompt/residue.py
URL:
Author: bugman
Date: Sun Nov 4 13:51:37 2007
New Revision: 3402
URL: http://svn.gna.org/viewcvs/relax?rev=3402view=rev
Log:
Updated the docstring modifications of the 'residue' user function class.
Modified:
1.3/prompt/residue.py
Modified: 1.3/prompt/residue.py
URL:
Author: bugman
Date: Sun Nov 4 14:01:46 2007
New Revision: 3404
URL: http://svn.gna.org/viewcvs/relax?rev=3404view=rev
Log:
Created the residue.renumber() user function.
Modified:
1.3/generic_fns/residue.py
1.3/prompt/residue.py
Modified: 1.3/generic_fns/residue.py
URL:
Author: bugman
Date: Sun Nov 4 14:37:59 2007
New Revision: 3405
URL: http://svn.gna.org/viewcvs/relax?rev=3405view=rev
Log:
Created the residue.display() user function.
This has been added to the data model redesign document. Two unit tests have
also been created for
the function.
Modified:
Author: bugman
Date: Sun Nov 4 14:49:55 2007
New Revision: 3407
URL: http://svn.gna.org/viewcvs/relax?rev=3407view=rev
Log:
Modified the data model redesign document to show that the residue user
function class is finished.
Modified:
1.3/docs/data_model_redesign
Modified:
Author: bugman
Date: Sun Nov 4 15:42:22 2007
New Revision: 3413
URL: http://svn.gna.org/viewcvs/relax?rev=3413view=rev
Log:
Added the setUp and tearDown functions for the generic_fns.molecule function
unit tests.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_molecule.py
Modified:
Author: bugman
Date: Sun Nov 4 15:41:08 2007
New Revision: 3412
URL: http://svn.gna.org/viewcvs/relax?rev=3412view=rev
Log:
Created the module docstring.
Modified:
1.3/generic_fns/molecule.py
Modified: 1.3/generic_fns/molecule.py
URL:
Author: bugman
Date: Sun Nov 4 15:43:40 2007
New Revision: 3414
URL: http://svn.gna.org/viewcvs/relax?rev=3414view=rev
Log:
Replace the contents of 'generic_fns/molecule.py' with those of
'generic_fns/residue.py'.
The file originated from 'generic_fns/residue.py' but was unmodified and out of
Author: bugman
Date: Sun Nov 4 17:14:57 2007
New Revision: 3415
URL: http://svn.gna.org/viewcvs/relax?rev=3415view=rev
Log:
Updated the module names in '__init__.py'.
Modified:
1.3/test_suite/unit_tests/generic_fns/__init__.py
Modified: 1.3/test_suite/unit_tests/generic_fns/__init__.py
Author: bugman
Date: Sun Nov 4 17:30:29 2007
New Revision: 3417
URL: http://svn.gna.org/viewcvs/relax?rev=3417view=rev
Log:
Removed the useless molecule user functions remaining from the copy from
'prompt/sequence.py'.
Modified:
1.3/prompt/molecule.py
Modified: 1.3/prompt/molecule.py
Author: bugman
Date: Sun Nov 4 17:31:34 2007
New Revision: 3418
URL: http://svn.gna.org/viewcvs/relax?rev=3418view=rev
Log:
Renamed the user function 'molecule.add()' to 'molecule.create()' in the
redesign doc.
Modified:
1.3/docs/data_model_redesign
Modified: 1.3/docs/data_model_redesign
Author: bugman
Date: Sun Nov 4 17:58:21 2007
New Revision: 3419
URL: http://svn.gna.org/viewcvs/relax?rev=3419view=rev
Log:
Added a unit test for the copying of the molecule data between different data
pipes.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_molecule.py
Modified:
Author: bugman
Date: Sun Nov 4 18:14:20 2007
New Revision: 3425
URL: http://svn.gna.org/viewcvs/relax?rev=3425view=rev
Log:
Added a unit test to test the failure of copying molecule data to a
non-existent data pipe.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_molecule.py
Author: bugman
Date: Sun Nov 4 18:11:21 2007
New Revision: 3424
URL: http://svn.gna.org/viewcvs/relax?rev=3424view=rev
Log:
Wrote the generic_fns.molecule.copy() function.
Modified:
1.3/generic_fns/molecule.py
Modified: 1.3/generic_fns/molecule.py
URL:
Author: bugman
Date: Sun Nov 4 18:10:46 2007
New Revision: 3423
URL: http://svn.gna.org/viewcvs/relax?rev=3423view=rev
Log:
A few more fixes to the 'return_molecule()' function.
Modified:
1.3/generic_fns/selection.py
Modified: 1.3/generic_fns/selection.py
URL:
Author: bugman
Date: Sun Nov 4 18:04:22 2007
New Revision: 3422
URL: http://svn.gna.org/viewcvs/relax?rev=3422view=rev
Log:
Another fix for the 'return_molecule()' function.
Modified:
1.3/generic_fns/selection.py
Modified: 1.3/generic_fns/selection.py
URL:
Author: bugman
Date: Sun Nov 4 18:01:59 2007
New Revision: 3421
URL: http://svn.gna.org/viewcvs/relax?rev=3421view=rev
Log:
Modified the 'generic_fns.residue.copy()' function to work with the modified
'return_molecule()' fn.
Five unit test were failing due to the previous commit. This was
Author: bugman
Date: Sun Nov 4 18:53:24 2007
New Revision: 3427
URL: http://svn.gna.org/viewcvs/relax?rev=3427view=rev
Log:
Created the molecule.copy() user function interface.
Modified:
1.3/prompt/molecule.py
Modified: 1.3/prompt/molecule.py
URL:
Author: bugman
Date: Sun Nov 4 18:54:23 2007
New Revision: 3428
URL: http://svn.gna.org/viewcvs/relax?rev=3428view=rev
Log:
A few changes to the residue.copy() user function RelaxError messages.
Modified:
1.3/prompt/residue.py
Modified: 1.3/prompt/residue.py
URL:
Author: bugman
Date: Sun Nov 4 19:17:35 2007
New Revision: 3433
URL: http://svn.gna.org/viewcvs/relax?rev=3433view=rev
Log:
Fixed a problem in the 'test_delete_all()' unit test.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_molecule.py
Modified:
Author: bugman
Date: Sun Nov 4 19:10:12 2007
New Revision: 3431
URL: http://svn.gna.org/viewcvs/relax?rev=3431view=rev
Log:
Added a unit test for the failure of the generic_fns.molecule.delete() function.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_molecule.py
Modified:
Author: bugman
Date: Sun Nov 4 19:07:43 2007
New Revision: 3430
URL: http://svn.gna.org/viewcvs/relax?rev=3430view=rev
Log:
Added a unit test for the deletion of all molecules.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_molecule.py
Modified:
Author: bugman
Date: Sun Nov 4 19:02:46 2007
New Revision: 3429
URL: http://svn.gna.org/viewcvs/relax?rev=3429view=rev
Log:
Added a unit test for the generic_fns.molecule.delete() function.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_molecule.py
Modified:
Author: bugman
Date: Sun Nov 4 19:26:18 2007
New Revision: 3435
URL: http://svn.gna.org/viewcvs/relax?rev=3435view=rev
Log:
A small change to a generic_fns.molecule.display() unit test.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_molecule.py
Modified:
Author: bugman
Date: Sun Nov 4 19:26:42 2007
New Revision: 3436
URL: http://svn.gna.org/viewcvs/relax?rev=3436view=rev
Log:
Wrote the generic_fns.molecule.display() function.
Modified:
1.3/generic_fns/molecule.py
Modified: 1.3/generic_fns/molecule.py
URL:
Author: bugman
Date: Sun Nov 4 19:28:43 2007
New Revision: 3437
URL: http://svn.gna.org/viewcvs/relax?rev=3437view=rev
Log:
Debugged the generic_fns.molecule.display() function.
Modified:
1.3/generic_fns/molecule.py
Modified: 1.3/generic_fns/molecule.py
URL:
Author: bugman
Date: Sun Nov 4 19:38:07 2007
New Revision: 3441
URL: http://svn.gna.org/viewcvs/relax?rev=3441view=rev
Log:
Modified the molecule user functions to include the identification string
documentation.
Modified:
1.3/prompt/molecule.py
Modified: 1.3/prompt/molecule.py
URL:
Author: bugman
Date: Sun Nov 4 19:41:53 2007
New Revision: 3443
URL: http://svn.gna.org/viewcvs/relax?rev=3443view=rev
Log:
Added a unit test for the generic_fns.molecule.rename() function.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_molecule.py
Modified:
Author: bugman
Date: Sun Nov 4 19:59:34 2007
New Revision: 3449
URL: http://svn.gna.org/viewcvs/relax?rev=3449view=rev
Log:
Added the molecule.rename() user function to the redesign document.
Modified:
1.3/docs/data_model_redesign
Modified: 1.3/docs/data_model_redesign
URL:
Author: bugman
Date: Sun Nov 4 20:15:11 2007
New Revision: 3453
URL: http://svn.gna.org/viewcvs/relax?rev=3453view=rev
Log:
Removed some unused imports.
Modified:
1.3/prompt/residue.py
Modified: 1.3/prompt/residue.py
URL:
Author: bugman
Date: Sun Nov 4 20:14:23 2007
New Revision: 3452
URL: http://svn.gna.org/viewcvs/relax?rev=3452view=rev
Log:
Removed some unused imports.
Modified:
1.3/prompt/molecule.py
Modified: 1.3/prompt/molecule.py
URL:
@@
-###
-# #
-# Copyright (C) 2003-2004, 2007 Edward d'Auvergne #
-# #
-# This file is part of the program relax
Author: bugman
Date: Sun Nov 4 20:12:54 2007
New Revision: 3450
URL: http://svn.gna.org/viewcvs/relax?rev=3450view=rev
Log:
Updated the redesign document to show that the molecule user functions are all
implemented.
Modified:
1.3/docs/data_model_redesign
Modified:
Author: bugman
Date: Sun Nov 4 20:49:37 2007
New Revision: 3455
URL: http://svn.gna.org/viewcvs/relax?rev=3455view=rev
Log:
Copied, for a second time, generic_fns/residue.py to generic_fns/spin.py.
This had previously been done, but the copied file was now well out of date and
useless. It has
Author: bugman
Date: Sun Nov 4 20:51:53 2007
New Revision: 3457
URL: http://svn.gna.org/viewcvs/relax?rev=3457view=rev
Log:
Updated the module docstring.
Modified:
1.3/generic_fns/spin.py
Modified: 1.3/generic_fns/spin.py
URL:
Author: bugman
Date: Sun Nov 4 20:56:55 2007
New Revision: 3460
URL: http://svn.gna.org/viewcvs/relax?rev=3460view=rev
Log:
Added the setUp, tearDown, and setup_data functions for the unit tests of
'generic_fns.spin'.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_spin.py
Modified:
Author: bugman
Date: Tue Nov 6 20:32:19 2007
New Revision: 3461
URL: http://svn.gna.org/viewcvs/relax?rev=3461view=rev
Log:
Copied the GPL 'COPYING' file to the 'minimise' dir to prepare to copy this
code to the minfx project.
Added:
1.3/minimise/COPYING
- copied unchanged from
Author: bugman
Date: Sun Nov 11 10:56:15 2007
New Revision: 3462
URL: http://svn.gna.org/viewcvs/relax?rev=3462view=rev
Log:
Removed the useless read(), sort(), and write() spin user functions.
These were remnants of the copy from the original sequence user function module.
Modified:
@@
-###
-# #
-# Copyright (C) 2007 Edward d'Auvergne#
-# #
-# This file is part of the program relax
Author: bugman
Date: Sun Nov 11 10:58:12 2007
New Revision: 3464
URL: http://svn.gna.org/viewcvs/relax?rev=3464view=rev
Log:
Copied the residue user function module to the spin module.
Added:
1.3/prompt/spin.py
- copied unchanged from r3461, 1.3/prompt/residue.py
Author: bugman
Date: Sun Nov 11 11:12:44 2007
New Revision: 3466
URL: http://svn.gna.org/viewcvs/relax?rev=3466view=rev
Log:
Wrote a unit test for checking the copying of spin data between molecules.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_spin.py
Modified:
Author: bugman
Date: Sun Nov 11 12:19:14 2007
New Revision: 3468
URL: http://svn.gna.org/viewcvs/relax?rev=3468view=rev
Log:
Added a unit test for copying spin data between data pipes.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_spin.py
Modified:
Author: bugman
Date: Sun Nov 11 12:14:24 2007
New Revision: 3467
URL: http://svn.gna.org/viewcvs/relax?rev=3467view=rev
Log:
Added a unit test for copying spins between residues and improvements to
'test_spin.py'.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_spin.py
Modified:
Author: bugman
Date: Sun Nov 11 12:26:55 2007
New Revision: 3470
URL: http://svn.gna.org/viewcvs/relax?rev=3470view=rev
Log:
Added a unit test for various types of failure of copying spin data.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_spin.py
Modified:
Author: bugman
Date: Sun Nov 11 12:41:03 2007
New Revision: 3474
URL: http://svn.gna.org/viewcvs/relax?rev=3474view=rev
Log:
Created the function generic_fns.selection.return_spin().
Modified:
1.3/generic_fns/selection.py
Modified: 1.3/generic_fns/selection.py
URL:
Author: bugman
Date: Sun Nov 11 12:59:27 2007
New Revision: 3476
URL: http://svn.gna.org/viewcvs/relax?rev=3476view=rev
Log:
Added a docstring and comments to the selection class method __contains__().
Modified:
1.3/generic_fns/selection.py
Modified: 1.3/generic_fns/selection.py
URL:
Author: bugman
Date: Sun Nov 11 13:06:33 2007
New Revision: 3477
URL: http://svn.gna.org/viewcvs/relax?rev=3477view=rev
Log:
Fixed up the data setup for the spin.copy() unit function tests.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_spin.py
Modified:
Author: bugman
Date: Sun Nov 11 13:10:25 2007
New Revision: 3479
URL: http://svn.gna.org/viewcvs/relax?rev=3479view=rev
Log:
Fixes to the spin.copy() unit test 'test_copy_between_molecules'.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_spin.py
Modified:
Author: bugman
Date: Sun Nov 11 13:16:57 2007
New Revision: 3481
URL: http://svn.gna.org/viewcvs/relax?rev=3481view=rev
Log:
Fixed a number of bugs in the generic_fns.spin unit test setup_data function.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_spin.py
Modified:
Author: bugman
Date: Sun Nov 11 13:21:21 2007
New Revision: 3482
URL: http://svn.gna.org/viewcvs/relax?rev=3482view=rev
Log:
Bug fixes for the spin.copy() unit test 'test_copy_between_residues'.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_spin.py
Modified:
Author: bugman
Date: Sun Nov 11 13:26:26 2007
New Revision: 3483
URL: http://svn.gna.org/viewcvs/relax?rev=3483view=rev
Log:
Added another check in the spin.copy unit test 'test_copy_fail'.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_spin.py
Modified:
Author: bugman
Date: Sun Nov 11 13:29:30 2007
New Revision: 3484
URL: http://svn.gna.org/viewcvs/relax?rev=3484view=rev
Log:
Split the generic_fns.spin.copy() unit test 'test_copy_fail' into four unit
tests.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_spin.py
Modified:
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