Author: bugman
Date: Tue Nov 20 11:48:03 2007
New Revision: 3649
URL: http://svn.gna.org/viewcvs/relax?rev=3649view=rev
Log:
Bug fix for the mol_to arg unit test of the molecule.copy() user function.
The mol_to arg can be None!
Modified:
1.3/test_suite/unit_tests/prompt/test_molecule.py
Author: bugman
Date: Tue Nov 20 11:38:13 2007
New Revision: 3646
URL: http://svn.gna.org/viewcvs/relax?rev=3646view=rev
Log:
Bug fix in the molecule.display() user function.
The test for None or a str should use 'and', not 'or'!
Modified:
1.3/prompt/molecule.py
Modified:
Author: bugman
Date: Tue Nov 20 13:32:33 2007
New Revision: 3657
URL: http://svn.gna.org/viewcvs/relax?rev=3657view=rev
Log:
Fixed the docstring for the TestCase subclass for the prompt.spin unit tests.
Modified:
1.3/test_suite/unit_tests/prompt/test_spin.py
Modified:
Author: bugman
Date: Tue Nov 20 13:35:57 2007
New Revision: 3659
URL: http://svn.gna.org/viewcvs/relax?rev=3659view=rev
Log:
Implemented the res_from arg unit test for the residue.copy() user function.
Modified:
1.3/test_suite/unit_tests/prompt/test_residue.py
Modified:
Author: bugman
Date: Tue Nov 20 13:36:43 2007
New Revision: 3660
URL: http://svn.gna.org/viewcvs/relax?rev=3660view=rev
Log:
Implemented the pipe_to arg unit test for the residue.copy() user function.
Modified:
1.3/test_suite/unit_tests/prompt/test_residue.py
Modified:
Author: bugman
Date: Tue Nov 20 13:37:17 2007
New Revision: 3661
URL: http://svn.gna.org/viewcvs/relax?rev=3661view=rev
Log:
Implemented the res_to arg unit test for the residue.copy() user function.
Modified:
1.3/test_suite/unit_tests/prompt/test_residue.py
Modified:
Author: bugman
Date: Tue Nov 20 13:32:15 2007
New Revision: 3656
URL: http://svn.gna.org/viewcvs/relax?rev=3656view=rev
Log:
Fixed the docstring for the TestCase subclass for the prompt.molecule unit
tests.
Modified:
1.3/test_suite/unit_tests/prompt/test_molecule.py
Modified:
Author: bugman
Date: Tue Nov 20 13:31:25 2007
New Revision: 3655
URL: http://svn.gna.org/viewcvs/relax?rev=3655view=rev
Log:
Created by copying the base for the unit tests of the residue user functions.
Added:
1.3/test_suite/unit_tests/prompt/test_residue.py
- copied, changed from
Author: bugman
Date: Tue Nov 20 13:28:06 2007
New Revision: 3654
URL: http://svn.gna.org/viewcvs/relax?rev=3654view=rev
Log:
A number of fixes to the base class for residue unit tests so that the tests
now all work.
Modified:
1.3/test_suite/unit_tests/residue_testing_base.py
Modified:
Author: bugman
Date: Tue Nov 20 13:44:42 2007
New Revision: 3669
URL: http://svn.gna.org/viewcvs/relax?rev=3669view=rev
Log:
Implemented the res_id arg unit test for the residue.renumber() user function.
Modified:
1.3/test_suite/unit_tests/prompt/test_residue.py
Modified:
Author: bugman
Date: Tue Nov 20 13:35:21 2007
New Revision: 3658
URL: http://svn.gna.org/viewcvs/relax?rev=3658view=rev
Log:
Implemented the pipe_from arg unit test for the residue.copy() user function.
Modified:
1.3/test_suite/unit_tests/prompt/test_residue.py
Modified:
Author: bugman
Date: Tue Nov 20 13:58:48 2007
New Revision: 3676
URL: http://svn.gna.org/viewcvs/relax?rev=3676view=rev
Log:
residue.rename() user function docstring whitespace fix.
Modified:
1.3/prompt/residue.py
Modified: 1.3/prompt/residue.py
URL:
Author: bugman
Date: Tue Nov 20 13:58:05 2007
New Revision: 3675
URL: http://svn.gna.org/viewcvs/relax?rev=3675view=rev
Log:
Yet another bug fix for residue.renumber().
This one was because generic_fns.residue.create() was being called!!!
Modified:
1.3/prompt/residue.py
Modified:
Author: bugman
Date: Tue Nov 20 13:40:35 2007
New Revision: 3665
URL: http://svn.gna.org/viewcvs/relax?rev=3665view=rev
Log:
Implemented the res_id arg unit test for the residue.create() user function.
Modified:
1.3/test_suite/unit_tests/prompt/test_residue.py
Modified:
Author: bugman
Date: Tue Nov 20 13:38:51 2007
New Revision: 3663
URL: http://svn.gna.org/viewcvs/relax?rev=3663view=rev
Log:
Implemented the res_name arg unit test for the residue.create() user function.
Modified:
1.3/test_suite/unit_tests/prompt/test_residue.py
Modified:
Author: bugman
Date: Tue Nov 20 13:43:37 2007
New Revision: 3667
URL: http://svn.gna.org/viewcvs/relax?rev=3667view=rev
Log:
Implemented the res_id arg unit test for the residue.rename() user function.
Modified:
1.3/test_suite/unit_tests/prompt/test_residue.py
Modified:
Author: bugman
Date: Tue Nov 20 13:42:34 2007
New Revision: 3666
URL: http://svn.gna.org/viewcvs/relax?rev=3666view=rev
Log:
Implemented the res_id arg unit test for the residue.display() user function.
Modified:
1.3/test_suite/unit_tests/prompt/test_residue.py
Modified:
Author: bugman
Date: Tue Nov 20 13:46:37 2007
New Revision: 3672
URL: http://svn.gna.org/viewcvs/relax?rev=3672view=rev
Log:
Bug fix for the new_number arg unit test for the spin.renumber() user function.
The test was named incorrectly.
Modified:
Author: bugman
Date: Tue Nov 20 13:49:33 2007
New Revision: 3673
URL: http://svn.gna.org/viewcvs/relax?rev=3673view=rev
Log:
Bug fix for the residue.renumber() user function.
The res_id was being tested as an int and the new_number as a str. This is the
wrong way around!
Modified:
Author: bugman
Date: Tue Nov 20 13:44:02 2007
New Revision: 3668
URL: http://svn.gna.org/viewcvs/relax?rev=3668view=rev
Log:
Implemented the new_name arg unit test for the residue.rename() user function.
Modified:
1.3/test_suite/unit_tests/prompt/test_residue.py
Modified:
Author: bugman
Date: Tue Nov 20 13:38:28 2007
New Revision: 3662
URL: http://svn.gna.org/viewcvs/relax?rev=3662view=rev
Log:
Implemented the res_num arg unit test for the residue.create() user function.
Modified:
1.3/test_suite/unit_tests/prompt/test_residue.py
Modified:
Author: bugman
Date: Tue Nov 20 16:04:19 2007
New Revision: 3677
URL: http://svn.gna.org/viewcvs/relax?rev=3677view=rev
Log:
Bug fix for the residue.copy() user function.
The pipe_from argument can be None.
Modified:
1.3/prompt/residue.py
Modified: 1.3/prompt/residue.py
URL:
Author: bugman
Date: Tue Nov 20 16:09:55 2007
New Revision: 3682
URL: http://svn.gna.org/viewcvs/relax?rev=3682view=rev
Log:
Bug fix for the residue.display() user function.
The res_id argument is allowed to be None.
Modified:
1.3/prompt/residue.py
Modified: 1.3/prompt/residue.py
URL:
Author: bugman
Date: Tue Nov 20 16:10:28 2007
New Revision: 3683
URL: http://svn.gna.org/viewcvs/relax?rev=3683view=rev
Log:
Added the missing import of RelaxNoneStrError.
Modified:
1.3/prompt/residue.py
Modified: 1.3/prompt/residue.py
URL:
Author: bugman
Date: Tue Nov 20 16:22:56 2007
New Revision: 3685
URL: http://svn.gna.org/viewcvs/relax?rev=3685view=rev
Log:
Bug fix for the RelaxNoPipeError error class.
The pipe argument of 0 was not being caught.
Modified:
1.3/relax_errors.py
Modified: 1.3/relax_errors.py
URL:
Author: bugman
Date: Tue Nov 20 17:05:54 2007
New Revision: 3692
URL: http://svn.gna.org/viewcvs/relax?rev=3692view=rev
Log:
Created a branch for implementing the N-state domain dynamics model.
Added:
branches/N_state_model/
- copied from r3691, 1.3/
Author: bugman
Date: Tue Nov 20 16:52:51 2007
New Revision: 3688
URL: http://svn.gna.org/viewcvs/relax?rev=3688view=rev
Log:
Fixed the print out of the residue.renumber() user function.
Modified:
1.3/prompt/residue.py
Modified: 1.3/prompt/residue.py
URL:
Author: bugman
Date: Tue Nov 20 16:51:39 2007
New Revision: 3687
URL: http://svn.gna.org/viewcvs/relax?rev=3687view=rev
Log:
Bug fix for the residue.create() user function.
Added the missing 'mol_id' argument to the residue.create() user function.
Modified:
1.3/prompt/residue.py
Modified:
Author: bugman
Date: Tue Nov 20 16:47:43 2007
New Revision: 3686
URL: http://svn.gna.org/viewcvs/relax?rev=3686view=rev
Log:
Bug fix for the residue.copy() user function.
In the test for 'pipe_to' being None, the 'pipe_from' argument was being
checked instead!
Modified:
==
--- branches/N_state_model/sample_scripts/N_state_model.py (added)
+++ branches/N_state_model/sample_scripts/N_state_model.py Tue Nov 20 17:25:35
2007
@@ -1,0 +1,11 @@
+Sample script demonstrating the use of the N-state model of domain motions.
+
+Author: Edward d'Auvergne
+Last updated
Author: bugman
Date: Tue Nov 20 17:50:41 2007
New Revision: 3700
URL: http://svn.gna.org/viewcvs/relax?rev=3700view=rev
Log:
Change of the internal structure of the generic_fns.state module.
The State class has been eliminated and its methods load() and save() have been
converted to module
Author: bugman
Date: Tue Nov 20 17:51:52 2007
New Revision: 3701
URL: http://svn.gna.org/viewcvs/relax?rev=3701view=rev
Log:
Removed the old State class from the namespace of 'self.relax.generic'.
Modified:
1.3/generic_fns/main.py
Modified: 1.3/generic_fns/main.py
URL:
Author: bugman
Date: Tue Nov 20 17:31:39 2007
New Revision: 3696
URL: http://svn.gna.org/viewcvs/relax?rev=3696view=rev
Log:
Merged revisions 3695 via svnmerge from
svn+ssh://[EMAIL PROTECTED]/svn/relax/1.3
r3695 | bugman | 2007-11-20 17:30:44 +0100 (Tue, 20 Nov 2007) | 3 lines
Author: bugman
Date: Tue Nov 20 18:07:13 2007
New Revision: 3707
URL: http://svn.gna.org/viewcvs/relax?rev=3707view=rev
Log:
Added a simple docstring to the relax_io module.
Modified:
1.3/relax_io.py
Modified: 1.3/relax_io.py
URL:
@@
-###
-# #
-# Copyright (C) 2003-2006 Edward d'Auvergne #
-# #
-# This file is part of the program
/test_suite/unit_tests/generic_fns/test_state.py Tue Nov 20 17:41:59 2007
@@ -1,0 +1,53 @@
+###
+# #
+# Copyright (C) 2007 Edward d'Auvergne
Author: bugman
Date: Tue Nov 20 17:38:03 2007
New Revision: 3697
URL: http://svn.gna.org/viewcvs/relax?rev=3697view=rev
Log:
Bug fix to make the test suite work again.
Modified:
1.3/relax
Modified: 1.3/relax
URL:
http://svn.gna.org/viewcvs/relax/1.3/relax?rev=3697r1=3696r2=3697view=diff
Author: bugman
Date: Tue Nov 20 17:59:04 2007
New Revision: 3705
URL: http://svn.gna.org/viewcvs/relax?rev=3705view=rev
Log:
Added some comments for the import statements.
Modified:
1.3/relax_io.py
Modified: 1.3/relax_io.py
URL:
Author: bugman
Date: Tue Nov 20 17:57:47 2007
New Revision: 3704
URL: http://svn.gna.org/viewcvs/relax?rev=3704view=rev
Log:
The open_read_file function is now imported as well.
Modified:
1.3/generic_fns/state.py
Modified: 1.3/generic_fns/state.py
URL:
Author: bugman
Date: Tue Nov 20 18:20:22 2007
New Revision: 3711
URL: http://svn.gna.org/viewcvs/relax?rev=3711view=rev
Log:
Renamed relax_io.mkdir to relax_io.mkdir_nofail and converted it from a class
method to a function.
Modified:
1.3/relax_io.py
Modified: 1.3/relax_io.py
URL:
Author: bugman
Date: Tue Nov 20 18:22:06 2007
New Revision: 3712
URL: http://svn.gna.org/viewcvs/relax?rev=3712view=rev
Log:
Renamed the file_path class method to the get_file_path module function.
Modified:
1.3/relax_io.py
Modified: 1.3/relax_io.py
URL:
Author: bugman
Date: Tue Nov 20 18:24:30 2007
New Revision: 3713
URL: http://svn.gna.org/viewcvs/relax?rev=3713view=rev
Log:
Bug fix for both generic_fns.state unit tests.
Modified:
1.3/generic_fns/state.py
Modified: 1.3/generic_fns/state.py
URL:
Author: bugman
Date: Tue Nov 20 18:12:07 2007
New Revision: 3710
URL: http://svn.gna.org/viewcvs/relax?rev=3710view=rev
Log:
Converted the open_write_file class method into a module function.
Modified:
1.3/relax_io.py
Modified: 1.3/relax_io.py
URL:
Author: bugman
Date: Tue Nov 20 18:08:21 2007
New Revision: 3708
URL: http://svn.gna.org/viewcvs/relax?rev=3708view=rev
Log:
Converted the log class method to a function.
Modified:
1.3/relax_io.py
Modified: 1.3/relax_io.py
URL:
Author: bugman
Date: Tue Nov 20 19:28:44 2007
New Revision: 3722
URL: http://svn.gna.org/viewcvs/relax?rev=3722view=rev
Log:
Added a unit test to check that some file paths are unmodified by
relax_io.get_file_path().
Modified:
1.3/test_suite/unit_tests/test_relax_io.py
Modified:
2007
@@ -1,0 +1,31 @@
+###
+# #
+# Copyright (C) 2007 Edward d'Auvergne
Author: bugman
Date: Tue Nov 20 19:14:17 2007
New Revision: 3719
URL: http://svn.gna.org/viewcvs/relax?rev=3719view=rev
Log:
Improved the docstring of the generic_fns.state.save() unit test.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_state.py
Modified:
Author: bugman
Date: Tue Nov 20 19:13:42 2007
New Revision: 3718
URL: http://svn.gna.org/viewcvs/relax?rev=3718view=rev
Log:
Improved the docstring of the generic_fns.state.load() unit test.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_state.py
Modified:
Author: bugman
Date: Tue Nov 20 19:09:37 2007
New Revision: 3716
URL: http://svn.gna.org/viewcvs/relax?rev=3716view=rev
Log:
Added a unit test for the generic_fns.state.load() function.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_state.py
Modified:
Author: bugman
Date: Tue Nov 20 19:14:59 2007
New Revision: 3720
URL: http://svn.gna.org/viewcvs/relax?rev=3720view=rev
Log:
Merged revisions 3715-3719 via svnmerge from
svn+ssh://[EMAIL PROTECTED]/svn/relax/1.3
r3715 | bugman | 2007-11-20 18:49:27 +0100 (Tue, 20 Nov 2007) | 3 lines
Author: bugman
Date: Tue Nov 20 19:32:19 2007
New Revision: 3723
URL: http://svn.gna.org/viewcvs/relax?rev=3723view=rev
Log:
Unit test for the modification of file paths by relax_io.get_file_path when a
directory is supplied.
Modified:
1.3/test_suite/unit_tests/test_relax_io.py
Modified:
Author: bugman
Date: Tue Nov 20 19:32:55 2007
New Revision: 3724
URL: http://svn.gna.org/viewcvs/relax?rev=3724view=rev
Log:
Improved the docstring of the unit test for relax_io.get_file_path().
Modified:
1.3/test_suite/unit_tests/test_relax_io.py
Modified:
Author: bugman
Date: Tue Nov 20 19:35:34 2007
New Revision: 3725
URL: http://svn.gna.org/viewcvs/relax?rev=3725view=rev
Log:
Added a unit test for relax_io.get_file_path when '~' is present in the path.
Modified:
1.3/test_suite/unit_tests/test_relax_io.py
Modified:
Author: bugman
Date: Tue Nov 20 19:42:44 2007
New Revision: 3728
URL: http://svn.gna.org/viewcvs/relax?rev=3728view=rev
Log:
Fixed the unit tests of generic_fns.state to use the newly renamed methods of
that module.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_state.py
Modified:
Author: bugman
Date: Tue Nov 20 19:44:06 2007
New Revision: 3729
URL: http://svn.gna.org/viewcvs/relax?rev=3729view=rev
Log:
Merged revisions 3721-3728 via svnmerge from
svn+ssh://[EMAIL PROTECTED]/svn/relax/1.3
r3721 | bugman | 2007-11-20 19:23:32 +0100 (Tue, 20 Nov 2007) | 3 lines
Author: bugman
Date: Tue Nov 20 23:01:11 2007
New Revision: 3730
URL: http://svn.gna.org/viewcvs/relax?rev=3730view=rev
Log:
Added one additional object to the data storage singleton for testing.
Modified:
1.3/test_suite/unit_tests/generic_fns/test_state.py
Modified:
Author: bugman
Date: Tue Nov 20 23:17:56 2007
New Revision: 3731
URL: http://svn.gna.org/viewcvs/relax?rev=3731view=rev
Log:
Fixed the generic_fns.state.load_state() function.
The relax data storage singleton is new being, object by object, recreated from
the initial state
as cleared by its
Author: bugman
Date: Tue Nov 20 23:20:56 2007
New Revision: 3732
URL: http://svn.gna.org/viewcvs/relax?rev=3732view=rev
Log:
Merged revisions 3730-3731 via svnmerge from
svn+ssh://[EMAIL PROTECTED]/svn/relax/1.3
r3730 | bugman | 2007-11-20 23:01:11 +0100 (Tue, 20 Nov 2007) | 3 lines
Author: bugman
Date: Tue Nov 20 23:42:48 2007
New Revision: 3736
URL: http://svn.gna.org/viewcvs/relax?rev=3736view=rev
Log:
Removed some unused imports.
Modified:
1.3/test_suite/unit_tests/_generic_fns/test_state.py
Modified: 1.3/test_suite/unit_tests/_generic_fns/test_state.py
URL:
Author: bugman
Date: Tue Nov 20 23:41:25 2007
New Revision: 3735
URL: http://svn.gna.org/viewcvs/relax?rev=3735view=rev
Log:
Renamed all the unit test directories to start with an underscore.
This is to fix issues with the importing of modules. These directories were
clashing with the real
Author: bugman
Date: Tue Nov 20 23:26:38 2007
New Revision: 3733
URL: http://svn.gna.org/viewcvs/relax?rev=3733view=rev
Log:
Created by copying a base class for testing both the prompt.state and
generic_fns.state modules.
Added:
1.3/test_suite/unit_tests/state_testing_base.py
-
Author: bugman
Date: Wed Nov 21 00:05:14 2007
New Revision: 3740
URL: http://svn.gna.org/viewcvs/relax?rev=3740view=rev
Log:
Implemented the file arg unit test for the state.load() user function.
Modified:
1.3/test_suite/unit_tests/_prompt/test_state.py
Modified:
Author: bugman
Date: Wed Nov 21 00:08:36 2007
New Revision: 3741
URL: http://svn.gna.org/viewcvs/relax?rev=3741view=rev
Log:
Implemented the dir arg unit test for the state.load() user function.
Modified:
1.3/test_suite/unit_tests/_prompt/test_state.py
Modified:
Author: bugman
Date: Wed Nov 21 00:09:32 2007
New Revision: 3742
URL: http://svn.gna.org/viewcvs/relax?rev=3742view=rev
Log:
Fix for the previously committed unit test.
Modified:
1.3/test_suite/unit_tests/_prompt/test_state.py
Modified: 1.3/test_suite/unit_tests/_prompt/test_state.py
URL:
Author: bugman
Date: Wed Nov 21 00:49:24 2007
New Revision: 3750
URL: http://svn.gna.org/viewcvs/relax?rev=3750view=rev
Log:
Fix for the nasty function argument bug!
Modified:
1.3/test_suite/unit_tests/_generic_fns/test_state.py
1.3/test_suite/unit_tests/_prompt/test_state.py
@@
###
# #
-# Copyright (C) 2003-2005 Edward d'Auvergne #
+# Copyright (C) 2003-2005, 2007 Edward d'Auvergne
Author: bugman
Date: Wed Nov 21 00:24:12 2007
New Revision: 3747
URL: http://svn.gna.org/viewcvs/relax?rev=3747view=rev
Log:
Fixed the argument unit tests for the state.load() user function.
Modified:
1.3/test_suite/unit_tests/_prompt/test_state.py
Modified:
Author: bugman
Date: Wed Nov 21 00:22:26 2007
New Revision: 3746
URL: http://svn.gna.org/viewcvs/relax?rev=3746view=rev
Log:
Updated the prompt.state and generic_fns.state unit tests to test the correct
functions.
Modified:
1.3/test_suite/unit_tests/_generic_fns/test_state.py
Author: bugman
Date: Wed Nov 21 00:13:29 2007
New Revision: 3744
URL: http://svn.gna.org/viewcvs/relax?rev=3744view=rev
Log:
Placed the generic.state module into the unit test class namespace.
Modified:
1.3/test_suite/unit_tests/_generic_fns/test_state.py
Modified:
Author: bugman
Date: Wed Nov 21 00:11:15 2007
New Revision: 3743
URL: http://svn.gna.org/viewcvs/relax?rev=3743view=rev
Log:
Shifted the prompt.state.State class instance into the unit test class
namespace.
Modified:
1.3/test_suite/unit_tests/_prompt/test_state.py
Modified:
Author: bugman
Date: Wed Nov 21 00:51:39 2007
New Revision: 3751
URL: http://svn.gna.org/viewcvs/relax?rev=3751view=rev
Log:
Implemented the file arg unit test for the state.save() user function.
Modified:
1.3/test_suite/unit_tests/_prompt/test_state.py
Modified:
Author: bugman
Date: Wed Nov 21 00:52:40 2007
New Revision: 3752
URL: http://svn.gna.org/viewcvs/relax?rev=3752view=rev
Log:
Implemented the dir arg unit test for the state.save() user function.
And a fix for the file arg unit test of state.save().
Modified:
Author: bugman
Date: Wed Nov 21 00:57:08 2007
New Revision: 3754
URL: http://svn.gna.org/viewcvs/relax?rev=3754view=rev
Log:
Changed the int data types so none would be 0 or 1 (the bin types).
Modified:
1.3/test_suite/unit_tests/_prompt/data_types.py
Modified:
Author: bugman
Date: Wed Nov 21 01:00:41 2007
New Revision: 3755
URL: http://svn.gna.org/viewcvs/relax?rev=3755view=rev
Log:
Implemented the compress_type arg unit test for the state.save() user function.
Modified:
1.3/test_suite/unit_tests/_prompt/test_state.py
Modified:
Author: bugman
Date: Wed Nov 21 12:33:10 2007
New Revision: 3757
URL: http://svn.gna.org/viewcvs/relax?rev=3757view=rev
Log:
Added dictionaries to the list of diverse objects for testing the behaviour of
user function args.
Modified:
1.3/test_suite/unit_tests/_prompt/data_types.py
Author: bugman
Date: Wed Nov 21 14:13:19 2007
New Revision: 3758
URL: http://svn.gna.org/viewcvs/relax?rev=3758view=rev
Log:
Added the N-state model to the list of data pipe types.
Now a data pipe corresponding to this model can be created.
Modified:
Author: bugman
Date: Wed Nov 21 14:22:26 2007
New Revision: 3759
URL: http://svn.gna.org/viewcvs/relax?rev=3759view=rev
Log:
Added prototype user functions for loading the alignment tensor and its errors.
Modified:
branches/N_state_model/sample_scripts/N_state_model.py
Modified:
@@
+###
+# #
+# Copyright (C) 2007 Edward d'Auvergne#
+# #
+# This file is part of the program relax
Author: bugman
Date: Wed Nov 21 14:32:20 2007
New Revision: 3762
URL: http://svn.gna.org/viewcvs/relax?rev=3762view=rev
Log:
Some fixes for the prompt.align_tensor unit tests.
Modified:
branches/N_state_model/test_suite/unit_tests/_prompt/test_align_tensor.py
Modified:
/prompt/align_tensor.py Wed Nov 21 14:37:13 2007
@@ -1,0 +1,43 @@
+###
+# #
+# Copyright (C) 2007 Edward d'Auvergne
Author: bugman
Date: Wed Nov 21 14:41:09 2007
New Revision: 3764
URL: http://svn.gna.org/viewcvs/relax?rev=3764view=rev
Log:
Implemented the params arg unit test for the align_tensor.init() user function.
Modified:
branches/N_state_model/test_suite/unit_tests/_prompt/test_align_tensor.py
Author: bugman
Date: Wed Nov 21 14:45:32 2007
New Revision: 3766
URL: http://svn.gna.org/viewcvs/relax?rev=3766view=rev
Log:
Added the missing imports.
Modified:
branches/N_state_model/test_suite/unit_tests/_prompt/test_align_tensor.py
Modified:
Author: bugman
Date: Wed Nov 21 14:46:54 2007
New Revision: 3767
URL: http://svn.gna.org/viewcvs/relax?rev=3767view=rev
Log:
Implemented the errors arg unit test for the align_tensor.init() user function.
Modified:
branches/N_state_model/test_suite/unit_tests/_prompt/test_align_tensor.py
Author: bugman
Date: Wed Nov 21 18:27:52 2007
New Revision: 3772
URL: http://svn.gna.org/viewcvs/relax?rev=3772view=rev
Log:
Fixed the arg unit tests of the align_tensor.init() user function.
They now have the params argument properly supplied.
Modified:
Author: bugman
Date: Wed Nov 21 18:22:43 2007
New Revision: 3770
URL: http://svn.gna.org/viewcvs/relax?rev=3770view=rev
Log:
Fixes for the align_tensor.init() user function.
Modified:
branches/N_state_model/prompt/align_tensor.py
Modified: branches/N_state_model/prompt/align_tensor.py
URL:
/test_suite/unit_tests/_prompt/test_sequence.py Thu Nov 22 00:00:01 2007
@@ -1,0 +1,55 @@
+###
+# #
+# Copyright (C) 2007 Edward d'Auvergne
Author: bugman
Date: Thu Nov 22 00:01:27 2007
New Revision: 3777
URL: http://svn.gna.org/viewcvs/relax?rev=3777view=rev
Log:
Fixed the base class name!
Modified:
1.3/test_suite/unit_tests/sequence_testing_base.py
Modified: 1.3/test_suite/unit_tests/sequence_testing_base.py
URL:
, 2004 Edward d'Auvergne #
+# Copyright (C) 2003, 2004, 2007 Edward d'Auvergne#
# #
# This file is part of the program relax
Author: bugman
Date: Thu Nov 22 00:40:09 2007
New Revision: 3779
URL: http://svn.gna.org/viewcvs/relax?rev=3779view=rev
Log:
Converted the sequence.read() user function to the new relax design.
This function now allows for sequences of molecules, residues, and spins to be
read into the
program.
Author: bugman
Date: Thu Nov 22 00:48:50 2007
New Revision: 3780
URL: http://svn.gna.org/viewcvs/relax?rev=3780view=rev
Log:
Added a unit test for the reading of the amino acid sequence out of a protein
NOE data file.
Modified:
1.3/test_suite/unit_tests/sequence_testing_base.py
Modified:
Author: bugman
Date: Thu Nov 22 00:53:24 2007
New Revision: 3783
URL: http://svn.gna.org/viewcvs/relax?rev=3783view=rev
Log:
Implemented the file arg unit test for the sequence.read() user function.
Modified:
1.3/test_suite/unit_tests/_prompt/test_sequence.py
Modified:
Author: bugman
Date: Thu Nov 22 01:00:40 2007
New Revision: 3787
URL: http://svn.gna.org/viewcvs/relax?rev=3787view=rev
Log:
Implemented the res_name_col arg unit test for the sequence.read() user
function.
Modified:
1.3/test_suite/unit_tests/_prompt/test_sequence.py
Modified:
Author: bugman
Date: Thu Nov 22 01:01:22 2007
New Revision: 3788
URL: http://svn.gna.org/viewcvs/relax?rev=3788view=rev
Log:
Implemented the spin_num_col arg unit test for the sequence.read() user
function.
Modified:
1.3/test_suite/unit_tests/_prompt/test_sequence.py
Modified:
Author: bugman
Date: Thu Nov 22 01:14:22 2007
New Revision: 3792
URL: http://svn.gna.org/viewcvs/relax?rev=3792view=rev
Log:
Added the framework for the unit tests of the generic_fns.sequence module.
Added:
1.3/test_suite/unit_tests/_generic_fns/test_sequence.py
- copied, changed from
Author: bugman
Date: Thu Nov 22 10:39:53 2007
New Revision: 3797
URL: http://svn.gna.org/viewcvs/relax?rev=3797view=rev
Log:
Modified the base class unit tests of state.load() and state.save() to use the
arg 'state'.
Modified:
1.3/test_suite/unit_tests/state_testing_base.py
Modified:
Author: bugman
Date: Thu Nov 22 10:41:48 2007
New Revision: 3798
URL: http://svn.gna.org/viewcvs/relax?rev=3798view=rev
Log:
More fixes for the state.load() and state.save() arg unit tests.
Modified:
1.3/test_suite/unit_tests/_prompt/test_state.py
Modified:
Author: bugman
Date: Thu Nov 22 10:43:31 2007
New Revision: 3799
URL: http://svn.gna.org/viewcvs/relax?rev=3799view=rev
Log:
Changed the 'file' arg to 'state' in the functions of the generic_fns.state
module.
Modified:
1.3/generic_fns/state.py
Modified: 1.3/generic_fns/state.py
URL:
Author: bugman
Date: Thu Nov 22 10:49:32 2007
New Revision: 3800
URL: http://svn.gna.org/viewcvs/relax?rev=3800view=rev
Log:
Modified open_read_file() and open_write_file() to handle file descriptors, by
returning the arg.
Modified:
1.3/relax_io.py
Modified: 1.3/relax_io.py
URL:
Author: bugman
Date: Thu Nov 22 11:01:34 2007
New Revision: 3801
URL: http://svn.gna.org/viewcvs/relax?rev=3801view=rev
Log:
Created a simple saved program state file for the state.load() unit tests.
Added:
1.3/test_suite/shared_data/saved_states/
Author: bugman
Date: Thu Nov 22 11:06:46 2007
New Revision: 3802
URL: http://svn.gna.org/viewcvs/relax?rev=3802view=rev
Log:
Modified the state base class unit tests to use the new saved state file.
This file is located in test_suite/shared_data/saved_states/.
Modified:
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