[no subject]

2014-05-14 Thread Panwalkar, Vineet
Dear users, I have recently carried out two seperate model-free analysis on a ~5 kDa protein with relaxation data measured at 600, 800 and 900 MHz. I used the fully automated analysis scripts for the analysis. In the first run, I used the lowest energy structure from my 15 structure ensemble.

AW: Re:

2014-05-14 Thread Panwalkar, Vineet
and C termini? Regards, Vineet Von: edward.dauver...@gmail.com [edward.dauver...@gmail.com]quot; im Auftrag von quot;Edward d'Auvergne [edw...@nmr-relax.com] Gesendet: Mittwoch, 14. Mai 2014 17:31 An: Panwalkar, Vineet Cc: relax-users@gna.org Betreff: Re

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2014-05-14 Thread Panwalkar, Vineet
Von: edward.dauver...@gmail.com [edward.dauver...@gmail.com]quot; im Auftrag von quot;Edward d'Auvergne [edw...@nmr-relax.com] Gesendet: Mittwoch, 14. Mai 2014 17:52 An: Panwalkar, Vineet Cc: relax-users@gna.org Betreff: Re: Hi Vineet, Please see below: I

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2014-05-14 Thread Panwalkar, Vineet
Hi Ed, Model free analysis does complete after taking in all those structures. Every single individual diffusion tensor model converges. The diffusion tensor data in the earlier email was obtained after model free analysis was completed using all 15 structures. I'll create a bug report

error on the diffusion tensor parameters

2014-12-18 Thread Panwalkar, Vineet
Hi all, I have a script to calculate errors on the diffusion tensor parameters, written by one of my former colleagues. It works well with relax v 3.2.3 however, in the version 3.3.3, it doesn't work and gives an error message saying ImportError: No module named my_relax.tensor_mc. I was

AW: error on the diffusion tensor parameters

2014-12-18 Thread Panwalkar, Vineet
is happening. But if you search for the text my_relax or file my_relax.py, you will see that this has never existed in any version of relax, from 2001 until now. Regards, Edward ___ On 18 December 2014 at 15:09, Panwalkar, Vineet Hi all, I have a script

AW: error on the diffusion tensor parameters

2014-12-18 Thread Panwalkar, Vineet
An: Panwalkar, Vineet Cc: relax-users@gna.org Betreff: Re: error on the diffusion tensor parameters Hi Vineet, From the error message, the my_relax module is clearly a special Python or relax module written by your former college. It is not part of relax, so I

Model free on symmetric homodimer, problems with grace plots

2015-10-07 Thread Panwalkar, Vineet
Hello Edward and relax users, I have been recently using relax to carry out model free analyses on two different states of my protein at 600 and 800 MHz. I am working with a LOV domain (132 residues) which exists in a ground "dark" state and a photoactive "light" state. Both states exist as a