Re: [sage-devel] Automatic test of optional packages+updates

2015-06-18 Thread Dima Pasechnik
this is http://trac.sagemath.org/ticket/18724 Needs review! On Thursday, 18 June 2015 08:56:53 UTC+1, Dima Pasechnik wrote: On Monday, 15 June 2015 00:57:44 UTC+1, vdelecroix wrote: All right. I recompiled Sage without chomp. Now, beyond the binary tree issues with bliss (#18698), I have

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-18 Thread Dima Pasechnik
On Monday, 15 June 2015 00:57:44 UTC+1, vdelecroix wrote: All right. I recompiled Sage without chomp. Now, beyond the binary tree issues with bliss (#18698), I have failing doctests related to gap_database (all of them are marked with #option - database_gap) in -

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-14 Thread Nathann Cohen
I would suspect that topcom should be responsible for the homology errors. No idea for what happens to binary trees. They seem to be reversed (left-right symmetry ?) That could be 'bliss'. It becomes the default algorithm to compute automorphism groups of graphs and canonical

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-14 Thread Vincent Delecroix
Indeed, chomp is installed but not in the list of sage -t optional packages. $ sage -optional|grep -v not_installed|cut -d. -f1 [package] arb bliss cbc chomp cryptominisat d3js database_cremona_ellcurve database_gap database_odlyzko_zeta database_pari database_stein_watkins

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-14 Thread Nathann Cohen
Indeed, chomp is installed but not in the list of sage -t optional packages. Turn 'chomp' into a new-style package and your problem is solved. Nathann -- You received this message because you are subscribed to the Google Groups sage-devel group. To unsubscribe from this group and stop

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-14 Thread Frédéric Chapoton
according to #16364, chomp could lead to this kind of things. But it is not in your list !! Le dimanche 14 juin 2015 10:29:33 UTC+2, Frédéric Chapoton a écrit : For binary trees, I have made http://trac.sagemath.org/ticket/18698 that needs review. Le dimanche 14 juin 2015 10:19:22 UTC+2,

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-14 Thread Frédéric Chapoton
I would suspect that topcom should be responsible for the homology errors. No idea for what happens to binary trees. They seem to be reversed (left-right symmetry ?) Frederic Le dimanche 14 juin 2015 00:14:24 UTC+2, Jeroen Demeyer a écrit : On 2015-06-13 22:21, Vincent Delecroix wrote:

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-14 Thread Frédéric Chapoton
Indeed, the failure for binary trees should come from canonical labeling. It would be enough to change the doctest so that they are no longer sensitive to that. I am no longer that sure that TOPCOM is the other problem. What other package is delaing with homology ? chomp ? Frederic Le

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-14 Thread Frédéric Chapoton
For binary trees, I have made http://trac.sagemath.org/ticket/18698 that needs review. Le dimanche 14 juin 2015 10:19:22 UTC+2, Frédéric Chapoton a écrit : Indeed, the failure for binary trees should come from canonical labeling. It would be enough to change the doctest so that they are no

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-14 Thread John H Palmieri
On Sunday, June 14, 2015 at 7:41:32 AM UTC-7, Nathann Cohen wrote: CHomP gets used by Sage if the system detects its presence. And then it leads to doctest errors. It should not: do you have an example of that? Only new-style optional packages should be automatically added to

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-14 Thread Nathann Cohen
CHomP gets used by Sage if the system detects its presence. And then it leads to doctest errors. It should not: do you have an example of that? Only new-style optional packages should be automatically added to --optional=..., and chomp is not a new-style package. Nathann -- You received this

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-14 Thread Nathann Cohen
It's not a matter of an optional doctest flag. The Sage code says (in cell_complex.py) O I see, sorry sorry. We are having the same problem with 'bliss' (#18698). Nathann -- You received this message because you are subscribed to the Google Groups sage-devel group. To unsubscribe from

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-14 Thread John H Palmieri
CHomP gets used by Sage if the system detects its presence. And then it leads to doctest errors. On Sunday, June 14, 2015 at 4:15:14 AM UTC-7, Nathann Cohen wrote: Indeed, chomp is installed but not in the list of sage -t optional packages. Turn 'chomp' into a new-style package and

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-14 Thread Vincent Delecroix
All right. I recompiled Sage without chomp. Now, beyond the binary tree issues with bliss (#18698), I have failing doctests related to gap_database (all of them are marked with #option - database_gap) in - sage/groups/perm_gps/permgroup_named.py - sage/tests/gap_packages.py -

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-13 Thread Vincent Delecroix
On 13/06/15 12:41, Nathann Cohen wrote: This mail advertises a couple of changes that appeared in the latest beta: - sage -t now involves all (installed) optional packages by default [1] Cool! This means that if you installed an optional package X, you don't have to add

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-13 Thread Nathann Cohen
What is our politic about that? Should we force a patchbot green light with respect to all optional packages? A green patchbot is not exactly a requirement for a ticket to pass. It's more a help than anything else. You see what it says, act on that knowledge. 1) the set of installed optional

[sage-devel] Automatic test of optional packages+updates

2015-06-13 Thread Nathann Cohen
Hellooo everybody, This mail advertises a couple of changes that appeared in the latest beta: - sage -t now involves all (installed) optional packages by default [1] This means that if you installed an optional package X, you don't have to add --optional=sage,X to sage -t in order to

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-13 Thread Vincent Delecroix
On 13/06/15 13:25, Nathann Cohen wrote: What is our politic about that? Should we force a patchbot green light with respect to all optional packages? A green patchbot is not exactly a requirement for a ticket to pass. It's more a help than anything else. You see what it says, act on that

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-13 Thread Vincent Delecroix
All right, I now have a lot of optional packages on librae arb bliss cbc cryptominisat d3js database_cremona_ellcurve database_gap database_odlyzko_zeta database_pari database_stein_watkins database_symbolic_data gambit lidia modular_decomposition mpir nauty normaliz nose plantri python2 sage

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-13 Thread Jeroen Demeyer
On 2015-06-13 22:21, Vincent Delecroix wrote: By the way I add trouble by installing some of them which tries to write in '/jones' or '/something' (that were two databases). Yes, there are some old packages which don't install anymore. In any case, like Nathann said, the automatic optional

Re: [sage-devel] Automatic test of optional packages+updates

2015-06-13 Thread Jeroen Demeyer
On 2015-06-13 22:21, Vincent Delecroix wrote: The problem is that now some tests fail (with make ptestlong) sage -t --long src/sage/combinat/binary_tree.py # 2 doctests failed sage -t --long src/sage/homology/examples.py # 6 doctests failed sage -t --long src/sage/geometry/fan.py # 4