Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread Volker Braun
I just tried the latest Xcode and gfortran fails to build for me, too... > >> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread Dima Pasechnik
On Sun, 13 Oct 2019, 20:57 David Coudert, wrote: > > > Le 13 oct. 2019 à 20:24, Dima Pasechnik a écrit : > > On Sun, Oct 13, 2019 at 4:57 PM David Coudert > wrote: > > > It’s working ! I can now complete compilation. > > Thanks both of you for the help. > > Now I have to remember to remove

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread David Coudert
> Le 13 oct. 2019 à 20:24, Dima Pasechnik a écrit : > > On Sun, Oct 13, 2019 at 4:57 PM David Coudert > wrote: >> >> It’s working ! I can now complete compilation. >> >> Thanks both of you for the help. >> >> Now I have to remember to remove MacOSX10.14.sdk

Re: [sage-devel] OSX Catalina works

2019-10-13 Thread David Joyner
On Sun, Oct 13, 2019 at 11:17 AM John H Palmieri wrote: > A few days ago, after the Catalina release, I used Homebrew to build gcc, > and it worked. Well, it built from source, which took a while, but it built > a version of gfortran which worked well enough to build Sage. (As far as I > know,

[sage-devel] Re: OSX Catalina works

2019-10-13 Thread Samuel Lelievre
Sun 2019-10-13 08:26:52 UTC, Volker Braun: > > I just upgraded the OSX buildbot and Sage works > in case anybody is wondering. This is the first time in years > that the latest OSX release doesn't introduce major toolchain > issues and/or scrambles the filesystem, hope this starts a trend ;-) >

Re: [sage-devel] scipy fails to build Sage 8.9 - MacOS 10.14.6

2019-10-13 Thread Zachary Scherr
Hi Dima, Just wanted to give you an update that Isuru's suggested fix also worked for me. I have Xcode installed and have the directory /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk and a symlink

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread Dima Pasechnik
On Sun, Oct 13, 2019 at 4:57 PM David Coudert wrote: > > It’s working ! I can now complete compilation. > > Thanks both of you for the help. > > Now I have to remember to remove MacOSX10.14.sdk when it will no longer be > needed, but when… hmm, so does this mean that you didn't do a full

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread David Coudert
It’s working ! I can now complete compilation. Thanks both of you for the help. Now I have to remember to remove MacOSX10.14.sdk when it will no longer be needed, but when… David. > Le 13 oct. 2019 à 17:32, Isuru Fernando a écrit : > > You have the same issue as

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread Isuru Fernando
You have the same issue as https://github.com/sagemath/binary-pkg/issues/19 Can you try downloading 10.14 SDK from https://github.com/phracker/MacOSX-SDKs/releases/download/10.14-beta4/MacOSX10.14.sdk.tar.xz extracting it inside

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread David Coudert
No, but MacOSX10.15.sdk confetti:lib dcoudert$ ll /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk ls: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk: No such file or directory

Re: [sage-devel] OSX Catalina works

2019-10-13 Thread John H Palmieri
A few days ago, after the Catalina release, I used Homebrew to build gcc, and it worked. Well, it built from source, which took a while, but it built a version of gfortran which worked well enough to build Sage. (As far as I know, it's completely functional, but the only reason I install

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread Isuru Fernando
Hi, Do you have the folder /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk ? Isuru On Sun, Oct 13, 2019 at 10:14 AM David Coudert wrote: > here it is. > > confetti:lib dcoudert$ /Users/dcoudert/sage3/sage/local/bin/gfortran >

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread David Coudert
here it is. confetti:lib dcoudert$ /Users/dcoudert/sage3/sage/local/bin/gfortran -print-prog-name=ld ld confetti:lib dcoudert$ /Users/dcoudert/sage3/sage/local/bin/gfortran -v Using built-in specs. COLLECT_GCC=/Users/dcoudert/sage3/sage/local/bin/gfortran

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread Isuru Fernando
Hi, This is a problem with gfortran using an incorrect linker. Can you post the output of, /Users/dcoudert/sage3/sage/local/bin/gfortran -print-prog-name=ld /Users/dcoudert/sage3/sage/local/bin/gfortran -v Isuru On Sun, Oct 13, 2019 at 8:21 AM David Coudert wrote: > confetti:lib

Re: [sage-devel] OSX Catalina works

2019-10-13 Thread Dima Pasechnik
the fact that Homebrew is not yet ready for 10.15 speaks for itself. On Sun, 13 Oct 2019, 14:56 David Joyner, wrote: > > > On Sun, Oct 13, 2019 at 4:26 AM Volker Braun > wrote: > >> I just upgraded the OSX buildbot and Sage works in case anybody is >> wondering. This is the first time in years

Re: [sage-devel] OSX Catalina works

2019-10-13 Thread David Joyner
On Sun, Oct 13, 2019 at 4:26 AM Volker Braun wrote: > I just upgraded the OSX buildbot and Sage works in case anybody is > wondering. This is the first time in years that the latest OSX release > doesn't introduce major toolchain issues and/or scrambles the filesystem, > hope this starts a trend

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread David Coudert
confetti:lib dcoudert$ otool -L libfflas.dylib libfflas.dylib: /Users/dcoudert/sage3/sage/local/lib/libfflas.1.dylib (compatibility version 2.0.0, current version 2.0.0) /Users/dcoudert/sage3/sage/local/lib/libgivaro.9.dylib (compatibility version 11.0.0, current version 11.1.0)

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread Dima Pasechnik
oops sorry, your gfortran is ok. how about fflas* package, it is probably broken... On Sun, 13 Oct 2019, 14:17 Dima Pasechnik, wrote: > are you building gfortran in Sage, or using a prebuilt one? > > it might be that its libgfortran got broken > > On Sun, 13 Oct 2019, 13:01 David Coudert,

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread Dima Pasechnik
are you building gfortran in Sage, or using a prebuilt one? it might be that its libgfortran got broken On Sun, 13 Oct 2019, 13:01 David Coudert, wrote: > > > confetti:lib dcoudert$ pwd > > /Users/dcoudert/sage3/sage/local/lib > > confetti:lib dcoudert$ otool -L libgfortran.dylib > >

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread David Coudert
confetti:lib dcoudert$ pwd /Users/dcoudert/sage3/sage/local/lib confetti:lib dcoudert$ otool -L libgfortran.dylib libgfortran.dylib: /Users/dcoudert/sage3/sage/local/lib/libgfortran.4.dylib (compatibility version 5.0.0, current version 5.0.0)

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread Dima Pasechnik
I gather that the error comes from one of -ldfftpack -lfftpack -lgfortran being incorrectly linked/broken. please locate the relevant lib*.dylib files (in SAGE_LOCAL?) and run "otool -L" on each of them to see if they are OK. On Sun, Oct 13, 2019 at 12:43 PM David Coudert wrote: > > it's an

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread David Coudert
it's an incremental build from 9.0.beta0. I upgraded my OS in July after a system crash. So I had to reinstall everything from scratch. In case, I have Xcode Version 11.1 (11A1027). Le dimanche 13 octobre 2019 13:29:21 UTC+2, Dima Pasechnik a écrit : > > Is this a build from scratch? > (after

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread Dima Pasechnik
Is this a build from scratch? (after an OS upgrade, incremental builds may break) On Sun, Oct 13, 2019 at 12:19 PM David Coudert wrote: > > > > Le dimanche 13 octobre 2019 12:53:02 UTC+2, Dima Pasechnik a écrit : >> >> We have already seen that puzzling >> >> ld: library not found for -lSystem

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread David Coudert
Le dimanche 13 octobre 2019 12:53:02 UTC+2, Dima Pasechnik a écrit : > > We have already seen that puzzling > > ld: library not found for -lSystem > > error message. > > Is there a /usr/lib/libSystem.dylib present? > Yes: confetti:sage dcoudert$ ll /usr/lib/libSystem.dylib lrwxr-xr-x 1

Re: [sage-devel] Error installing scipy-1.2.0 when compiling sage math 9.0.beta1

2019-10-13 Thread Dima Pasechnik
We have already seen that puzzling ld: library not found for -lSystem error message. Is there a /usr/lib/libSystem.dylib present? If yes, then I guess this means a broken dependency of scipy, more specifically, a broken dylib, built along the way. or Xcode that needs to be reinstalled... Can

[sage-devel] OSX Catalina works

2019-10-13 Thread Volker Braun
I just upgraded the OSX buildbot and Sage works in case anybody is wondering. This is the first time in years that the latest OSX release doesn't introduce major toolchain issues and/or scrambles the filesystem, hope this starts a trend ;-) -- You received this message because you are