Re: [sage-release] Sage 10.2.beta5 released

2023-09-29 Thread John H Palmieri 
Some of the doctest failures that I see are being dealt with at #36364; see 
also #36337.

On Friday, September 29, 2023 at 4:39:39 AM UTC-7 Kenji Iohara wrote:

> John: Thanks ! As you mentioned, it worked with `./configure 
> --with-system-gfortran=no`.
>
> But ptestlong has created several doc test failed….
>
> 28/09/2023 23:30、John H Palmieri のメール:
>
> As with the past few releases — and I think this is due to OS X and 
> command-line tool upgrades, not Sage — I have been getting a number of 
> failures due to some warning messages. These continue with 10.2.beta5, and 
> they are addressed by https://github.com/sagemath/sage/pull/36337. The 
> giac-related failures, perhaps starting with OS X 13.3 (
> https://github.com/sagemath/sage/issues/35646), are also still there.
>
>
> On Wednesday, September 27, 2023 at 3:56:29 PM UTC-7 Volker Braun wrote:
>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html
>>
>>
>> 1cf0c13e527 (tag: 10.2.beta5, github/develop) Updated SageMath version to 
>> 10.2.beta5
>> b01856309bc gh-36345: `ecm`: Work around build failure with Xcode 15
>> 2c714728fd0 gh-36339: fix expect interface for newer ptyprocess
>> bb04839a5d5 gh-36338: CI: Merge open blocker PRs in all CI workflows + 
>> other improvements
>> a9cb852973a gh-36336: add some class roles for linking Errors in doc
>> 247ea886f0e gh-36335: using more itertools.product
>> f4dc2bc1c8e gh-36330: src/sage/repl/load.py: replace tmp_dir()
>> f6a9058bca4 gh-36327: fix the linter once more
>> 496fb917960 gh-36326: more fixes for E228 and E225 in combinat and some 
>> other folders
>> ccf337e8443 gh-36323: src/sage/combinat/words/words.py: replace tmp_dir()
>> feed3d41ef9 gh-36319: build/pkgs/setuptools_scm_git_archive: Remove 
>> (obsolete)
>> 22a32e79929 gh-36316: build/pkgs/lrcalc_python: add standard python 
>> spkg-configure.m4
>> 034f1f643b7 gh-36299: Generic implementation of fitting ideal
>> c325311ba47 gh-36284: improve checks
>> 0b5fc8e97a0 gh-36276: Yet more spkg_configure for standard python packages
>> ed478e76787 gh-36275: `sage.graphs.generic_graph`: some care with return 
>> ... else statements
>> 602b57114df gh-36270: full pep8 for modular/hecke
>> 4f8a8af331f gh-36267: Change `ipympl`/`pkgconfig`/`widgetsnbextension` to 
>> wheel packages, drop build deps
>> 1af7f8f2b6b gh-36234: Use patchelf from the system
>> ce855de61cb gh-36166: Additions to the bigraded Betti number methods
>> 05d7d1dceeb gh-36110: Update Cython to 3.0.2
>> 5cef467b357 gh-35866: CI build.yml, doc-build.yml: Use output groups
>> 2829cf2182f gh-35537: Fix Sphinx markup in some file
>> 4d3e807ba54 (tag: 10.2.beta4) Updated SageMath version to 10.2.beta4
>>
>
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Re: [sage-release] Sage 10.2.beta5 released

2023-09-29 Thread Kenji Iohara 
John: Thanks ! As you mentioned, it worked with `./configure 
--with-system-gfortran=no`.

But ptestlong has created several doc test failed….

> 28/09/2023 23:30、John H Palmieri のメール:
> 
> As with the past few releases — and I think this is due to OS X and 
> command-line tool upgrades, not Sage — I have been getting a number of 
> failures due to some warning messages. These continue with 10.2.beta5, and 
> they are addressed by https://github.com/sagemath/sage/pull/36337. The 
> giac-related failures, perhaps starting with OS X 13.3 
> (https://github.com/sagemath/sage/issues/35646), are also still there.
> 
> 
> On Wednesday, September 27, 2023 at 3:56:29 PM UTC-7 Volker Braun wrote:
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html
>> 
>> 
>> 1cf0c13e527 (tag: 10.2.beta5, github/develop) Updated SageMath version to 
>> 10.2.beta5
>> b01856309bc gh-36345: `ecm`: Work around build failure with Xcode 15
>> 2c714728fd0 gh-36339: fix expect interface for newer ptyprocess
>> bb04839a5d5 gh-36338: CI: Merge open blocker PRs in all CI workflows + other 
>> improvements
>> a9cb852973a gh-36336: add some class roles for linking Errors in doc
>> 247ea886f0e gh-36335: using more itertools.product
>> f4dc2bc1c8e gh-36330: src/sage/repl/load.py: replace tmp_dir()
>> f6a9058bca4 gh-36327: fix the linter once more
>> 496fb917960 gh-36326: more fixes for E228 and E225 in combinat and some 
>> other folders
>> ccf337e8443 gh-36323: src/sage/combinat/words/words.py: replace tmp_dir()
>> feed3d41ef9 gh-36319: build/pkgs/setuptools_scm_git_archive: Remove 
>> (obsolete)
>> 22a32e79929 gh-36316: build/pkgs/lrcalc_python: add standard python 
>> spkg-configure.m4
>> 034f1f643b7 gh-36299: Generic implementation of fitting ideal
>> c325311ba47 gh-36284: improve checks
>> 0b5fc8e97a0 gh-36276: Yet more spkg_configure for standard python packages
>> ed478e76787 gh-36275: `sage.graphs.generic_graph`: some care with return ... 
>> else statements
>> 602b57114df gh-36270: full pep8 for modular/hecke
>> 4f8a8af331f gh-36267: Change `ipympl`/`pkgconfig`/`widgetsnbextension` to 
>> wheel packages, drop build deps
>> 1af7f8f2b6b gh-36234: Use patchelf from the system
>> ce855de61cb gh-36166: Additions to the bigraded Betti number methods
>> 05d7d1dceeb gh-36110: Update Cython to 3.0.2
>> 5cef467b357 gh-35866: CI build.yml, doc-build.yml: Use output groups
>> 2829cf2182f gh-35537: Fix Sphinx markup in some file
>> 4d3e807ba54 (tag: 10.2.beta4) Updated SageMath version to 10.2.beta4
> 
> 
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Re: [sage-release] Sage 10.2.beta5 released

2023-09-29 Thread Kazuyoshi Furutaka 
>
> There's also an open PR https://github.com/sagemath/sage/pull/35593 with
> fixes for the conda environment, which may be worth trying.
>

I'm afraid I didn't do what I should do, but anyway I've tried the
following:

   1. `git clone -b conda_remove_broken_packages
   https://github.com/mkoeppe/sage.git` and copy the tree
   2. `./bootstrap-conda`
   3. `mamba env update --file environment-optional-3.11.yml --name
   sage-build` within sage-build
   4. `./bootstrap`
   5. `./configure --with-python=$CONDA_PREFIX/bin/python
   --prefix=$CONDA_PREFIX`
   6. `conda install openssh pycodestyle esbonio` -> nbconvert-core,
   prompt-toolkit, and simplegeneric were installed
   7. `./config.status --recheck && ./config.status`
   8. `make doc-clean doc-uninstall && make -j10`

The make failed in building setuptools...

> The following package(s) may have failed to build (not necessarily during
> this run of 'make all-start'):
>
> * package: setuptools-68.2.2
>   last build time: Sep 29 14:52
>   log file:
>  
> /home/furutaka/work/sage/sage-10.2.beta5-condaSys_mkoeppe/logs/pkgs/setuptools-68.2.2.log
>   build directory:
> /home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/setuptools-68.2.2
>

Kazuyoshi

2023年9月29日(金) 11:00 Kazuyoshi Furutaka :

> Hi again...
>
> I'll attach the output of `conda list` to this email.
>
> And...
> `make setuptools_wheel-no-deps` failed with one more error (an additional
> log attached):
>
>> The following package(s) may have failed to build (not necessarily
>> during this run of 'make setuptools_wheel-no-deps'):
>>
>> * package: pythran-0.14.0
>>   last build time: Sep 28 19:36
>>   log file:
>>  
>> /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/pythran-0.14.0.log
>>   build directory:
>> /home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/pythran-0.14.0
>>
>> * package: fastjsonschema-2.18.0
>>   last build time: Sep 28 19:36
>>   log file:
>>  
>> /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/fastjsonschema-2.18.0.log
>>   build directory:
>> /home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/fastjsonschema-2.18.0
>>
>> * package: sage_conf-10.2.beta5
>>   last build time: Sep 28 19:36
>>   log file:
>>  
>> /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/sage_conf-10.2.beta5.log
>>
>> * package: setuptools_wheel-65.6.3
>>   last build time: Sep 29 10:51
>>   log file:
>>  
>> /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/setuptools_wheel-65.6.3.log
>>   build directory:
>> /home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/setuptools_wheel-65.6.3
>>
>
> Later I'll read the PR...
>
> Kazuyoshi
>
> 2023年9月29日(金) 10:36 Matthias Köppe :
>
>> Thanks for sharing the logs for these installation problems; this is
>> valuable information.
>> I agree that there seems to be something wrong with the installation of
>> setuptools in this environment. The command "conda list" could provide
>> additional helpful information.
>> You could try if "make setuptools_wheel-no-deps" improves the situation.
>>
>> There's also an open PR https://github.com/sagemath/sage/pull/35593 with
>> fixes for the conda environment, which may be worth trying.
>>
>> On Thursday, September 28, 2023 at 6:15:32 PM UTC-7
>> furutaka@gmail.com wrote:
>>
>>> Hi...
>>>
>>> The only thing I can do is to test the build (and use) of the software,
>>> and therefore I do so...
>>> (useless?)
>>>
>>> The build of the release on Fedora 38 (x86_64).
>>>
>>> 1. With system packages, the build finished w/o any problem.
>>>
>>> 2. The build by following the procedure described in
>>>
>>> https://doc.sagemath.org/html/en/installation/conda.html#using-conda-to-provide-system-packages-for-the-sage-distribution
>>> (with environment-optional.yml in place of environment.yml) stopped
>>> with the following errors while doing `make doc-clean doc-uninstall && make
>>> -j10`:
>>>
   The following package(s) may have failed to build (not necessarily
 during this run of 'make all-start'):

 * package: pythran-0.14.0
   last build time: Sep 28 19:36
   log file:
  /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/p
 ythran-0.14.0.log
   build directory:
 /home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/
 pythran-0.14.0

 * package: fastjsonschema-2.18.0
   last build time: Sep 28 19:36
   log file:
  
 /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/fastjsonschema-2.18.0.log
   build directory:
 /home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/fastjsonschema-2.18.0

 * package: sage_conf-10.2.beta5
   last build time: Sep 28 19:36
   log file:
  
 /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/sage_conf-10.2.beta5.log


>>> The former two seemed to be caused because of the lack of setuptools???
>>>
>>> Kazuyoshi
>>>