date:20231215

[sage-release] Re: Sage 10.3.beta2 released

2023-12-15 Thread John H Palmieri

In fact I don't understand alarm(...) at all. Maybe it works better on 
linux or older OS X releases, but on the OS X machines to which I have 
access, it feels broken. If I do:

sage: alarm(0.3)

then after 0.3 seconds I see a message

KeyboardInterrupt escaped interact()

That's fine. But then the next command I issue tends to get interrupted:

┌┐
│ SageMath version 10.3.beta2, Release Date: 2023-12-13  │
│ Using Python 3.11.6. Type "help()" for help.   │
└┘
┏┓
┃ Warning: this is a prerelease version, and it may be unstable. ┃
┗┛
sage: alarm(0.3)
sage:   
  

KeyboardInterrupt escaped interact()

sage: identity_matrix(10)
---
AlarmInterruptTraceback (most recent call last)
Cell In[2], line 1
> 1 identity_matrix(Integer(10))
...

Why? The alarm should have already happened. As I said before, if I exit 
Sage, then it does not do so gracefully. Furthermore, if instead of exiting 
I issue a second alarm, Sage crashes:

┌┐
│ SageMath version 10.3.beta2, Release Date: 2023-12-13  │
│ Using Python 3.11.6. Type "help()" for help.   │
└┘
┏┓
┃ Warning: this is a prerelease version, and it may be unstable. ┃
┗┛
sage: alarm(0.3)
sage:   
  

KeyboardInterrupt escaped interact()

sage: alarm(0.3)
sage:   
  

KeyboardInterrupt escaped interact()

Error in sys.excepthook:
Traceback (most recent call last):
  File 
"/usr/local/Cellar/python@3.11/3.11.6_1/Frameworks/Python.framework/Versions/3.11/lib/python3.11/pathlib.py",
 
line 1250, in is_dir
return S_ISDIR(self.stat().st_mode)
   ^
AttributeError: 'str' object has no attribute 'stat'

Original exception was:
Traceback (most recent call last):
  File "/Users/palmieri/Sage/TESTING/sage-10.3.beta2/src/bin/sage-ipython", 
line 16, in 
app.start()
  File 
"/Users/palmieri/Sage/TESTING/sage-10.3.beta2/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/IPython/terminal/ipapp.py",
 
line 317, in start
self.shell.mainloop()
  File 
"/Users/palmieri/Sage/TESTING/sage-10.3.beta2/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/IPython/terminal/interactiveshell.py",
 
line 899, in mainloop
self.restore_term_title()
  File 
"/Users/palmieri/Sage/TESTING/sage-10.3.beta2/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/IPython/terminal/interactiveshell.py",
 
line 602, in restore_term_title
restore_term_title()
  File 
"/Users/palmieri/Sage/TESTING/sage-10.3.beta2/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/IPython/utils/terminal.py",
 
line 115, in restore_term_title
_restore_term_title()
  File 
"/Users/palmieri/Sage/TESTING/sage-10.3.beta2/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/IPython/utils/terminal.py",
 
line 83, in _restore_term_title_xterm
assert _xterm_term_title_saved
AssertionError


Something seems to be pretty broken.

On Friday, December 15, 2023 at 10:52:41 AM UTC-8 John H Palmieri wrote:

> Perhaps related, and I also see this with 10.3.beta1: after using 
> alarm(...), Sage does not exit gracefully. 
>
> % ./sage
> ┌┐
> │ SageMath version 10.3.beta2, Release Date: 2023-12-13  │
> │ Using Python 3.11.6. Type "help()" for help.   │
> └┘
> ┏┓
> ┃ Warning: this is a prerelease version, and it may be unstable. ┃
> ┗┛
> sage: alarm(0.3)
> sage: 
> 
>
> KeyboardInterrupt escaped interact()
>
> sage: exit()   
> 
> Error in sys.excepthook:
> Traceback (most recent call last):
>   File 
> "/usr/local/Cellar/pyt...@3.11/3.11.6_1/Frameworks/Python.framework/Versions/3.11/lib/python3.11/pathlib.py",
>  
> line 1250, in is_dir
>

[sage-release] Re: Sage 10.3.beta2 released

2023-12-15 Thread John H Palmieri

Perhaps related, and I also see this with 10.3.beta1: after using 
alarm(...), Sage does not exit gracefully. 

% ./sage
┌┐
│ SageMath version 10.3.beta2, Release Date: 2023-12-13  │
│ Using Python 3.11.6. Type "help()" for help.   │
└┘
┏┓
┃ Warning: this is a prerelease version, and it may be unstable. ┃
┗┛
sage: alarm(0.3)
sage:   
  

KeyboardInterrupt escaped interact()

sage: exit()   

Error in sys.excepthook:
Traceback (most recent call last):
  File 
"/usr/local/Cellar/python@3.11/3.11.6_1/Frameworks/Python.framework/Versions/3.11/lib/python3.11/pathlib.py",
 
line 1250, in is_dir
return S_ISDIR(self.stat().st_mode)
   ^
AttributeError: 'str' object has no attribute 'stat'

Original exception was:
Traceback (most recent call last):
  File "/Users/palmieri/Sage/TESTING/sage-10.3.beta2/src/bin/sage-ipython", 
line 16, in 
app.start()
  File 
"/Users/palmieri/Sage/TESTING/sage-10.3.beta2/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/IPython/terminal/ipapp.py",
 
line 317, in start
self.shell.mainloop()
  File 
"/Users/palmieri/Sage/TESTING/sage-10.3.beta2/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/IPython/terminal/interactiveshell.py",
 
line 899, in mainloop
self.restore_term_title()
  File 
"/Users/palmieri/Sage/TESTING/sage-10.3.beta2/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/IPython/terminal/interactiveshell.py",
 
line 602, in restore_term_title
restore_term_title()
  File 
"/Users/palmieri/Sage/TESTING/sage-10.3.beta2/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/IPython/utils/terminal.py",
 
line 115, in restore_term_title
_restore_term_title()
  File 
"/Users/palmieri/Sage/TESTING/sage-10.3.beta2/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/IPython/utils/terminal.py",
 
line 83, in _restore_term_title_xterm
assert _xterm_term_title_saved
AssertionError



The same happens if I execute several commands between the alarm and exit().

On Friday, December 15, 2023 at 7:07:53 AM UTC-8 Dima Pasechnik wrote:

> On Thursday, December 14, 2023 at 4:05:31 PM UTC John H Palmieri wrote:
>
> On OS X (both Intel and Apple Silicon) I'm getting a lot of new failures, 
> many of the form "Killed due to alarm":
>
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/libs/flint/nmod_poly_linkage.pxi  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/data_structures/bounded_integer_sequences.pyx  # Killed due to 
> alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/libs/gap/element.pyx  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/interfaces/gap.py  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/geometry/integral_points.pxi  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/libs/libecm.pyx  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/coding/linear_code.py  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/rings/factorint_pari.pyx  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/rings/integer.pyx  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/rings/complex_arb.pyx  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/parallel/decorate.py  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/rings/polynomial/polynomial_element.pyx  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/rings/polynomial/polynomial_zmod_flint.pyx  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/sets/recursively_enumerated_set.pyx  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/structure/coerce_actions.pyx  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
> src/sage/matrix/matrix_integer_dense.pyx  # Killed due to alarm
> sage -t --long --random-seed=144845266083009760424007645487960076680 
>

Re: [sage-release] Sage 10.3.beta2 released

2023-12-15 Thread Matthias Köppe

Thanks for the report. editables was missing a dependency; this is fixed 
in https://github.com/sagemath/sage/pull/36885

On Friday, December 15, 2023 at 4:32:56 AM UTC-8 furutaka@gmail.com 
wrote:

> I tried to build this version on two Fedora-39 machines.
> The build completed w/o any problem on one machine, but failed on another 
> (at work) when building editables;
> after doing `./sage -pip install flit_core` in the build environment, the 
> build seemed to be continuing (I had to leave work before the build 
> finished).
> I'll attach the log.
>
> Kazuyoshi
>
> 2023年12月14日(木) 9:42 Volker Braun :
>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html
>>
>>
>> e2e0f8db21e (github/develop, tag: 10.3.beta2) Updated SageMath version to 
>> 10.3.beta2
>> 2395f7bb45f gh-36862: Fix one doctest for giac 1.9.0-73
>> c85cb61919a gh-36859: src/sage/libs/pari/convert_sage_matrix.pyx: Remove 
>> `sage_setup: distribution`
>> 69d5801de36 gh-36856: various details in modules folder (ruff, 
>> cython-lint, roles)
>> 3d9dc8d3daa gh-36855: some ruff details in modular (unicode)
>> c4bebb1988a gh-36854: various details in categories (ruff C4 and UP02)
>> dd54b42ad4e gh-36853: various details in algebras (ruff mostly)
>> 033d95a9500 gh-36852: `failing doctest on Apple M1`: corrected the test 
>> case by sorting the result
>> 49e6c9f99c4 gh-36851: various details in group (ruff and pycodestyle)
>> 1abf5c643ff gh-36846: Resolve nice tree decomp bug in #36843, and allow 
>> `label_nice_tree_decomposition` to return a digraph
>> f98a4c5176d gh-36837: update qepcad to B 1.74
>> 31541b6b79a gh-36828: README.md: Update section on macOS arm64
>> 4f34f9226af gh-36823: `ipython` 8.18 and related upgrades, remove 
>> `backcall`
>> f2be9758869 gh-36822: Fix linter failure in 10.3.beta0
>> 0121df0e205 gh-36818: Corrected the typo in documentation - Permutation 
>> Groups
>> c7443b1a9cd gh-36815: Add badges to README.md
>> 2ec492a4c57 gh-36812: made changes to the documentaiton of developer in 
>> python3 print
>> 27a07dad385 gh-36802: Python toolchain as wheel packages
>> 990525bcbe7 gh-36799: Create index-pdf.html in html build
>> 1c19a98dbc0 gh-36794: `sage --package create --pypi`: Create a wheel 
>> package by default if possible
>> 74122cc0704 gh-36785: `build/pkgs/cython`: Update to 3.0.6
>> 1bbdb3e8339 gh-36778: Remove Cygwin distro support
>> 5d6ca008b98 gh-36769: Do not fail when `java` is available but `jmol` is 
>> not.
>> eba2cf9f708 gh-36767: Reduce execution time of conda workflow
>> dfdd7da660b gh-36765: Update to new conway-polynomials python package
>> 2ab6da5e95c gh-36764: Improve performance of __getitem__ of 
>> CFiniteSequence
>> 3d335fa4e73 gh-36758: Details in interfaces
>> 71bcb097360 gh-36756: Improve headers of the number field section in toc
>> a1642b17162 gh-36754: Relativize more header imports
>> 35d8f8ca475 gh-36752: `numpy` 1.26.2, `scipy` 1.11.4
>> 11c575f gh-36749: Choice of the name of primitive elements for 
>> subfields of QQbar
>> 6cadd8410aa gh-36747: `build/bin/sage-spkg`: Add support for installing 
>> script packages
>> 07a5b275228 gh-36719: rectify docs around Tkinter
>> 77fbf9ac064 gh-36640: Use GNU make tokenpool protocol to manage 
>> parallelism of doctesting
>> 2fd122b767b gh-36439: CVXpy 1.4.1, SCS 3.2.3, osqp_python 0.6.3, CVXOPT 
>> 1.3.2, CyLP 0.92.2, add `clarabel` solver
>> ab24b1c3113 (tag: 10.3.beta1) Updated SageMath version to 10.3.beta1
>>
>> -- 
>>
> You received this message because you are subscribed to the Google Groups 
>> "sage-release" group.
>> To unsubscribe from this group and stop receiving emails from it, send an 
>> email to sage-release...@googlegroups.com.
>>
> To view this discussion on the web visit 
>> https://groups.google.com/d/msgid/sage-release/7b05414c-bad6-4597-acb7-cf4d7b93375dn%40googlegroups.com
>>  
>> 
>> .
>>
>
>
> -- 
> Kazuyoshi Furutaka
>

-- 
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[sage-release] Re: Sage 10.3.beta2 released

2023-12-15 Thread Dima Pasechnik



On Thursday, December 14, 2023 at 4:05:31 PM UTC John H Palmieri wrote:

On OS X (both Intel and Apple Silicon) I'm getting a lot of new failures, 
many of the form "Killed due to alarm":

sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/libs/flint/nmod_poly_linkage.pxi  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/data_structures/bounded_integer_sequences.pyx  # Killed due to 
alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/libs/gap/element.pyx  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/interfaces/gap.py  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/geometry/integral_points.pxi  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/libs/libecm.pyx  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/coding/linear_code.py  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/rings/factorint_pari.pyx  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/rings/integer.pyx  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/rings/complex_arb.pyx  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/parallel/decorate.py  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/rings/polynomial/polynomial_element.pyx  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/rings/polynomial/polynomial_zmod_flint.pyx  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/sets/recursively_enumerated_set.pyx  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/structure/coerce_actions.pyx  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/matrix/matrix_integer_dense.pyx  # Killed due to alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/schemes/elliptic_curves/descent_two_isogeny.pyx  # Killed due to 
alarm
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/doctest/forker.py  # 5 doctests failed
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/doctest/control.py  # 8 doctests failed

Plus some doctests that have been failing for a while:

sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/rings/polynomial/multi_polynomial_ideal.py  # Killed due to 
segmentation fault
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/libs/giac/__init__.py  # Timed out
sage -t --long --random-seed=144845266083009760424007645487960076680 
src/sage/tests/books/computational-mathematics-with-sagemath/mpoly_doctest.py 
 # 1 doctest failed


yes, I  also see quite a few # Killed due to alarm on Apple M1 Studio box 
(hosted by William).
This is with quite a few Homebrew packages.

However, it's a Heisenbug: running these tests separately works.

Darwin studio.local 23.1.0 Darwin Kernel Version 23.1.0: Mon Oct  9 
21:27:24 PDT 2023; root:xnu-10002.41.9~6/RELEASE_ARM64_T6000 arm64
--
sage -t --random-seed=216456570840224251681732656912784587240 
src/sage/libs/flint/nmod_poly_linkage.pxi  # Killed due to alarm
sage -t --random-seed=216456570840224251681732656912784587240 
src/sage/libs/gap/element.pyx  # Killed due to alarm
sage -t --random-seed=216456570840224251681732656912784587240 
src/sage/libs/libecm.pyx  # Killed due to alarm
sage -t --random-seed=216456570840224251681732656912784587240 
src/sage/geometry/integral_points.pxi  # Killed due to alarm
sage -t --random-seed=216456570840224251681732656912784587240 
src/sage/rings/factorint_pari.pyx  # Killed due to alarm
sage -t --random-seed=216456570840224251681732656912784587240 
src/sage/rings/complex_arb.pyx  # Killed due to alarm
sage -t --random-seed=216456570840224251681732656912784587240 
src/sage/coding/linear_code.py  # Killed due to alarm
sage -t --random-seed=216456570840224251681732656912784587240 
src/sage/rings/polynomial/polynomial_element.pyx  # Killed due to alarm
sage -t --random-seed=216456570840224251681732656912784587240 
src/sage/sets/recursively_enumerated_set.pyx  # Killed due to alarm
sage -t --random-seed=216456570840224251681732656912784587240 
src/sage/structure/coerce_actions.pyx  # Killed due to alarm
sage -t --random-seed=216456570840224251681732656912784587240 
src/sage/rings/integer.pyx  # Killed due to alarm
sage -t --random-seed=216456570840224251681732656912784587240

Re: [sage-release] Sage 10.3.beta2 released

2023-12-15 Thread Kazuyoshi Furutaka

I tried to build this version on two Fedora-39 machines.
The build completed w/o any problem on one machine, but failed on another
(at work) when building editables;
after doing `./sage -pip install flit_core` in the build environment, the
build seemed to be continuing (I had to leave work before the build
finished).
I'll attach the log.

Kazuyoshi

2023年12月14日(木) 9:42 Volker Braun :

> As always, you can get the latest beta version from the "develop" git
> branch. Alternatively, the self-contained source tarball is at
> http://www.sagemath.org/download-latest.html
>
>
> e2e0f8db21e (github/develop, tag: 10.3.beta2) Updated SageMath version to
> 10.3.beta2
> 2395f7bb45f gh-36862: Fix one doctest for giac 1.9.0-73
> c85cb61919a gh-36859: src/sage/libs/pari/convert_sage_matrix.pyx: Remove
> `sage_setup: distribution`
> 69d5801de36 gh-36856: various details in modules folder (ruff,
> cython-lint, roles)
> 3d9dc8d3daa gh-36855: some ruff details in modular (unicode)
> c4bebb1988a gh-36854: various details in categories (ruff C4 and UP02)
> dd54b42ad4e gh-36853: various details in algebras (ruff mostly)
> 033d95a9500 gh-36852: `failing doctest on Apple M1`: corrected the test
> case by sorting the result
> 49e6c9f99c4 gh-36851: various details in group (ruff and pycodestyle)
> 1abf5c643ff gh-36846: Resolve nice tree decomp bug in #36843, and allow
> `label_nice_tree_decomposition` to return a digraph
> f98a4c5176d gh-36837: update qepcad to B 1.74
> 31541b6b79a gh-36828: README.md: Update section on macOS arm64
> 4f34f9226af gh-36823: `ipython` 8.18 and related upgrades, remove
> `backcall`
> f2be9758869 gh-36822: Fix linter failure in 10.3.beta0
> 0121df0e205 gh-36818: Corrected the typo in documentation - Permutation
> Groups
> c7443b1a9cd gh-36815: Add badges to README.md
> 2ec492a4c57 gh-36812: made changes to the documentaiton of developer in
> python3 print
> 27a07dad385 gh-36802: Python toolchain as wheel packages
> 990525bcbe7 gh-36799: Create index-pdf.html in html build
> 1c19a98dbc0 gh-36794: `sage --package create --pypi`: Create a wheel
> package by default if possible
> 74122cc0704 gh-36785: `build/pkgs/cython`: Update to 3.0.6
> 1bbdb3e8339 gh-36778: Remove Cygwin distro support
> 5d6ca008b98 gh-36769: Do not fail when `java` is available but `jmol` is
> not.
> eba2cf9f708 gh-36767: Reduce execution time of conda workflow
> dfdd7da660b gh-36765: Update to new conway-polynomials python package
> 2ab6da5e95c gh-36764: Improve performance of __getitem__ of CFiniteSequence
> 3d335fa4e73 gh-36758: Details in interfaces
> 71bcb097360 gh-36756: Improve headers of the number field section in toc
> a1642b17162 gh-36754: Relativize more header imports
> 35d8f8ca475 gh-36752: `numpy` 1.26.2, `scipy` 1.11.4
> 11c575f gh-36749: Choice of the name of primitive elements for
> subfields of QQbar
> 6cadd8410aa gh-36747: `build/bin/sage-spkg`: Add support for installing
> script packages
> 07a5b275228 gh-36719: rectify docs around Tkinter
> 77fbf9ac064 gh-36640: Use GNU make tokenpool protocol to manage
> parallelism of doctesting
> 2fd122b767b gh-36439: CVXpy 1.4.1, SCS 3.2.3, osqp_python 0.6.3, CVXOPT
> 1.3.2, CyLP 0.92.2, add `clarabel` solver
> ab24b1c3113 (tag: 10.3.beta1) Updated SageMath version to 10.3.beta1
>
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> .
>


-- 
Kazuyoshi Furutaka

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Using cached file /home/furutaka/work/sage/sage-10.3.beta2-gcc/upstream/editables-0.5.tar.gz
editables-0.5

Setting up build directory for editables-0.5
Finished extraction
No patch files found in ../patches

Host system:
Linux Furutaka-3.tokai-sc.jaea.go.jp 6.6.4-200.fc39.x86_64 #1 SMP PREEMPT_DYNAMIC Sun Dec  3 18:13:11 UTC 2023 x86_64 GNU/Linux

C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=/usr/bin/gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/13/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-redhat-linux
Configured with: ../configure

[sage-release] Re: Sage 10.3.beta2 released

[sage-release] Re: Sage 10.3.beta2 released

Re: [sage-release] Sage 10.3.beta2 released

[sage-release] Re: Sage 10.3.beta2 released

Re: [sage-release] Sage 10.3.beta2 released

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