[sage-release] Re: Sage 10.4.beta5 released

[Emmanuel Charpentier]

On Debian testing running on core i7n + 16 GB RAM, upgrading 10.4.beta4 to 
10.4.beta5 and running ptestlong gives one permanent failure :
-- sage 
-t --long --warn-long 237.3 
--random-seed=209914381797624961646623654578067480099 
src/sage/misc/cython.py # 3 doctests failed 
-- 

Thi has already been reported 
 for 
10.4.beta4.

HTH,
​
Le vendredi 3 mai 2024 à 01:08:14 UTC+2, Volker Braun a écrit :

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
>
> 744939e037a (github/develop, tag: 10.4.beta5) Updated SageMath version to 
> 10.4.beta5
> e77b3df44ad gh-37915: Replace doctests from jacobian_khuri_makdisi.py 
> taking too long time
> 422c59e95ce gh-37911: Fix overflow in hypergeometric trace
> 67f26757bcb gh-37904: Change `SetSystem` representation
> a1354a74b91 gh-37883: gap: don't use deprecated LaTeX() and LaTeXObj()
> 53566be0ca2 gh-37882: eclib: fix doctests after 20240408 update
> 31cf6d3b0fa gh-37872: sage.{topology,homology}: Remove deprecated chomp 
> interface
> 75c86c8f28c gh-37870: `sage.ext`: Remove deprecated code
> c46302c3a6d gh-37868: `sage.misc.misc`: Remove deprecated code
> b14d3ec8dc3 gh-37856: `sage.misc.dist`: Remove; deprecated in #30207 (2022)
> 6753fbdecdc gh-37855: `sage.misc.package`: Remove deprecated code
> 9ce51d09089 gh-37853: Work around inconsistent iteration in 
> `multi_polynomial_sequence.py`
> 969b687c5f6 gh-37851: Fix issue 37587 regarding the Link class plot method
> 620babd49fb gh-37841: `.ci/write-dockerfile.sh`: Move here from build/bin/
> af6c2085804 gh-37836: fricas/do not get inputform twice
> ac9c1b07203 gh-37835: Optimize `DisjointSet`
> 6e58d87dcc1 gh-37833: `build/pkgs/{python3,setuptools}`: Update fedora 
> distro info
> 5ab5dc3c3fe gh-37829: src/sage/manifolds/differentiable: Docstring/doctest 
> edits
> db630cdf2d9 gh-37827: `sage.tensor`: Tiny doc fixes
> 7d0a347f99b gh-37826: FreeModuleAutomorphism: Add more invariants
> 698774f5289 gh-37825: `FiniteRankFreeModuleMorphism.display`: Show matrix 
> decorated with basis element names
> 3041aac4a21 gh-37823: Fix LaTeX output of FreeModuleTensor.display_comp
> 8296cec240f gh-37822: Fix bug in TensorField.apply_map
> 71d2a96e0d7 gh-37810: build/pkgs/gambit: Remove
> f87f3e3581e gh-37808: Removed non-working and utterly old @rename_keyword 
> in farey_symbol.pyx
> d64f1a8accb gh-37807: Added some documentation in the developer's guide 
> regarding deprecation
> 68e657c09c3 gh-37802: Add the downward monotonic cone to the cone catalogue
> abad24ff15f gh-37800: some cython-lint suggestions fixed in real rings
> 106c0d76be6 gh-37799: little details in quadratic_forms (pep8, ruff, etc)
> 2406c159c81 gh-37798: some ruff C4 fixes in combinat
> ac8792fc3d2 gh-37797: fix the category of quasi-modular form rings
> 1b5a3450555 gh-37793: add links to standard errors in various places
> ca3d59a8f09 gh-37792: remove a stray leftover in in sa2si_ZZmod()
> e9e3a3db928 gh-37750: CI Build: Fix "test modularized distributions" 
> after #37022
> 9097fa25d4b gh-37738: CI Build: Show segfaults using GitHub 
> annotations
> 46b7ec223c3 gh-37722: Remove `CombinatorialClass`
> 19b06ac7387 gh-37715: `sage.{calculus,functions,numerical,symbolic}`: 
> Docstring/doctest cosmetics, `# needs`
> e4e33257ab6 gh-37693: Implement the hypercenter and upper central series 
> for finite dimensional Lie algebras
> f0a28504d47 gh-37692: `matrix`, `Graph.incidence_matrix`, 
> `LinearMatroid.representation`: Support constructing 
> `Hom(CombinatorialFreeModule)` elements
> 9783f965806 gh-37681: Quaternion Ideal Pushforwards and Pullbacks
> 0a75254c9ea gh-37650: src/sage/features/sagemath.py: Add feature SAGE_SRC
> 721fc792a23 gh-37492: make sagelib work with singular>=4.3.2.p15 (future 
> 4.4)
> 2d77ac5ea3c gh-37277: pip 24, setuptools 69.5.1, hatchling 1.22.5, 
> hatch_fancy_pypi_readme 24.1.0, platformdirs 4.2.0, packaging 24.0, 
> trove_classifiers 2024.4.10, wheel 0.43.0
> 248fde327ef gh-37099: GH Actions: Build platform-independent wheels of 
> sagemath-environment, sage-setup, sage-sws2rst for PyPI
> 90e08c88c60 gh-37057: deprecated functions is_Cone, is_Polyhedron, 
> is_LatticePolytope
> ca1b5e6ea0d gh-37041: update FriCAS to 1.3.10, allow building with sbcl
> f19f431d095 gh-36982: Make pyproject.toml the source for build dependencies
> 23ba3d8f174 gh-36768: Retrieve more information of fundamental groups of 
> plane curves
> f633de0146a gh-36498: CI build, doc-build: Run containers explicitly, 
> separate jobs for pyright, build, modularized tests, long tests
> f3847837395 gh-35618: Use `pypa/build` instead of `pip wheel`
> c4363fc97eb (tag: 10.4.beta4) Updated SageMath version to 10.4.beta4
>

-- 

[sage-release] Re: Sage 10.4.beta5 released

[Matthias Köppe]

Hi John, thanks for the report; fixed 
in https://github.com/sagemath/sage/pull/37929

On Friday, May 3, 2024 at 9:45:20 AM UTC-7 John H Palmieri wrote:

After running `make configure`, the git repository is not clean:

% git status 
On branch develop
Your branch is up to date with 'upstream/develop'.

Untracked files:
  (use "git add ..." to include in what will be committed)
pkgs/sagemath-categories/requirements-editable.txt
pkgs/sagemath-environment/requirements-editable.txt
pkgs/sagemath-objects/requirements-editable.txt
pkgs/sagemath-repl/requirements-editable.txt


On Thursday, May 2, 2024 at 4:08:14 PM UTC-7 Volker Braun wrote:

As always, you can get the latest beta version from the "develop" git 
branch. Alternatively, the self-contained source tarball is at 
http://www.sagemath.org/download-latest.html


744939e037a (github/develop, tag: 10.4.beta5) Updated SageMath version to 
10.4.beta5

 

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[sage-release] Re: Sage 10.4.beta5 released

[John H Palmieri]

After running `make configure`, the git repository is not clean:

% git status 
On branch develop
Your branch is up to date with 'upstream/develop'.

Untracked files:
  (use "git add ..." to include in what will be committed)
pkgs/sagemath-categories/requirements-editable.txt
pkgs/sagemath-environment/requirements-editable.txt
pkgs/sagemath-objects/requirements-editable.txt
pkgs/sagemath-repl/requirements-editable.txt


On Thursday, May 2, 2024 at 4:08:14 PM UTC-7 Volker Braun wrote:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
>
> 744939e037a (github/develop, tag: 10.4.beta5) Updated SageMath version to 
> 10.4.beta5
> e77b3df44ad gh-37915: Replace doctests from jacobian_khuri_makdisi.py 
> taking too long time
> 422c59e95ce gh-37911: Fix overflow in hypergeometric trace
> 67f26757bcb gh-37904: Change `SetSystem` representation
> a1354a74b91 gh-37883: gap: don't use deprecated LaTeX() and LaTeXObj()
> 53566be0ca2 gh-37882: eclib: fix doctests after 20240408 update
> 31cf6d3b0fa gh-37872: sage.{topology,homology}: Remove deprecated chomp 
> interface
> 75c86c8f28c gh-37870: `sage.ext`: Remove deprecated code
> c46302c3a6d gh-37868: `sage.misc.misc`: Remove deprecated code
> b14d3ec8dc3 gh-37856: `sage.misc.dist`: Remove; deprecated in #30207 (2022)
> 6753fbdecdc gh-37855: `sage.misc.package`: Remove deprecated code
> 9ce51d09089 gh-37853: Work around inconsistent iteration in 
> `multi_polynomial_sequence.py`
> 969b687c5f6 gh-37851: Fix issue 37587 regarding the Link class plot method
> 620babd49fb gh-37841: `.ci/write-dockerfile.sh`: Move here from build/bin/
> af6c2085804 gh-37836: fricas/do not get inputform twice
> ac9c1b07203 gh-37835: Optimize `DisjointSet`
> 6e58d87dcc1 gh-37833: `build/pkgs/{python3,setuptools}`: Update fedora 
> distro info
> 5ab5dc3c3fe gh-37829: src/sage/manifolds/differentiable: Docstring/doctest 
> edits
> db630cdf2d9 gh-37827: `sage.tensor`: Tiny doc fixes
> 7d0a347f99b gh-37826: FreeModuleAutomorphism: Add more invariants
> 698774f5289 gh-37825: `FiniteRankFreeModuleMorphism.display`: Show matrix 
> decorated with basis element names
> 3041aac4a21 gh-37823: Fix LaTeX output of FreeModuleTensor.display_comp
> 8296cec240f gh-37822: Fix bug in TensorField.apply_map
> 71d2a96e0d7 gh-37810: build/pkgs/gambit: Remove
> f87f3e3581e gh-37808: Removed non-working and utterly old @rename_keyword 
> in farey_symbol.pyx
> d64f1a8accb gh-37807: Added some documentation in the developer's guide 
> regarding deprecation
> 68e657c09c3 gh-37802: Add the downward monotonic cone to the cone catalogue
> abad24ff15f gh-37800: some cython-lint suggestions fixed in real rings
> 106c0d76be6 gh-37799: little details in quadratic_forms (pep8, ruff, etc)
> 2406c159c81 gh-37798: some ruff C4 fixes in combinat
> ac8792fc3d2 gh-37797: fix the category of quasi-modular form rings
> 1b5a3450555 gh-37793: add links to standard errors in various places
> ca3d59a8f09 gh-37792: remove a stray leftover in in sa2si_ZZmod()
> e9e3a3db928 gh-37750: CI Build: Fix "test modularized distributions" 
> after #37022
> 9097fa25d4b gh-37738: CI Build: Show segfaults using GitHub 
> annotations
> 46b7ec223c3 gh-37722: Remove `CombinatorialClass`
> 19b06ac7387 gh-37715: `sage.{calculus,functions,numerical,symbolic}`: 
> Docstring/doctest cosmetics, `# needs`
> e4e33257ab6 gh-37693: Implement the hypercenter and upper central series 
> for finite dimensional Lie algebras
> f0a28504d47 gh-37692: `matrix`, `Graph.incidence_matrix`, 
> `LinearMatroid.representation`: Support constructing 
> `Hom(CombinatorialFreeModule)` elements
> 9783f965806 gh-37681: Quaternion Ideal Pushforwards and Pullbacks
> 0a75254c9ea gh-37650: src/sage/features/sagemath.py: Add feature SAGE_SRC
> 721fc792a23 gh-37492: make sagelib work with singular>=4.3.2.p15 (future 
> 4.4)
> 2d77ac5ea3c gh-37277: pip 24, setuptools 69.5.1, hatchling 1.22.5, 
> hatch_fancy_pypi_readme 24.1.0, platformdirs 4.2.0, packaging 24.0, 
> trove_classifiers 2024.4.10, wheel 0.43.0
> 248fde327ef gh-37099: GH Actions: Build platform-independent wheels of 
> sagemath-environment, sage-setup, sage-sws2rst for PyPI
> 90e08c88c60 gh-37057: deprecated functions is_Cone, is_Polyhedron, 
> is_LatticePolytope
> ca1b5e6ea0d gh-37041: update FriCAS to 1.3.10, allow building with sbcl
> f19f431d095 gh-36982: Make pyproject.toml the source for build dependencies
> 23ba3d8f174 gh-36768: Retrieve more information of fundamental groups of 
> plane curves
> f633de0146a gh-36498: CI build, doc-build: Run containers explicitly, 
> separate jobs for pyright, build, modularized tests, long tests
> f3847837395 gh-35618: Use `pypa/build` instead of `pip wheel`
> c4363fc97eb (tag: 10.4.beta4) Updated SageMath version to 10.4.beta4
>

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Re: [sage-release] Re: Sage 10.4.beta5 released

[david....@gmail.com]

on macOS, I'm also running Python 3.12 and it's working well (see below).

How can I extract data to see where the tests time out ?

Thanks,
David.

MAC-04017247:sage dcoudert$ ./sage -t src/sage/graphs/generators/

Running doctests with ID 2024-05-03-11-03-11-89a06eef.

Git branch: develop

Git ref: 10.4.beta3-802-g744939e037

Running with SAGE_LOCAL='/Users/dcoudert/sage/local' and 
SAGE_VENV='/Users/dcoudert/sage/local/var/lib/sage/venv-python3.12'

Using 
--optional=benzene,bliss,buckygen,csdp,dot2tex,gap_packages,glucose,homebrew,igraph,libsemigroups,mcqd,pip,plantri,python_igraph,sage,sage_spkg,tdlib,texttable

Features to be detected: 
4ti2,SAGE_SRC,benzene,bliss,buckygen,conway_polynomials,csdp,cvxopt,cvxopt,database_cremona_ellcurve,database_cremona_mini_ellcurve,database_cubic_hecke,database_ellcurves,database_graphs,database_jones_numfield,database_knotinfo,dvipng,ecm,fpylll,fricas,gap_package_atlasrep,gap_package_design,gap_package_grape,gap_package_guava,gap_package_hap,gap_package_polycyclic,gap_package_qpa,gap_package_quagroup,gfan,graphviz,imagemagick,ipython,jmol,jupymake,kenzo,latte_int,lrcalc_python,lrslib,matroid_database,mcqd,meataxe,mpmath,msolve,nauty,networkx,numpy,palp,pandoc,pdf2svg,pdftocairo,pexpect,phitigra,pillow,plantri,polytopes_db,polytopes_db_4d,pplpy,primecountpy,ptyprocess,pynormaliz,pyparsing,python_igraph,requests,rubiks,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.groups,sage.libs.braiding,sage.libs.ecl,sage.libs.flint,sage.libs.gap,sage.libs.linbox,sage.libs.m4ri,sage.libs.ntl,sage.libs.pari,sage.libs.singular,sage.misc.cython,sage.modular,sage.modules,sage.numerical.mip,sage.plot,sage.rings.complex_double,sage.rings.finite_rings,sage.rings.function_field,sage.rings.number_field,sage.rings.padics,sage.rings.polynomial.pbori,sage.rings.real_double,sage.rings.real_mpfr,sage.sat,sage.schemes,sage.symbolic,sage_numerical_backends_coin,sagemath_doc_html,scipy,singular,sphinx,symengine_py,sympy,tdlib,threejs

Doctesting 12 files.

sage -t --warn-long 22.9 
--random-seed=239687165614427705433447704824745784831 
src/sage/graphs/generators/degree_sequence.py

[17 tests, 3.72 s]

sage -t --warn-long 22.9 
--random-seed=239687165614427705433447704824745784831 
src/sage/graphs/generators/distance_regular.pyx

[181 tests, 14.73 s]

sage -t --warn-long 22.9 
--random-seed=239687165614427705433447704824745784831 
src/sage/graphs/generators/smallgraphs.py

[510 tests, 12.77 s]

sage -t --warn-long 22.9 
--random-seed=239687165614427705433447704824745784831 
src/sage/graphs/generators/families.py

[449 tests, 9.25 s]

sage -t --warn-long 22.9 
--random-seed=239687165614427705433447704824745784831 
src/sage/graphs/generators/all.py

[0 tests, 0.00 s]

sage -t --warn-long 22.9 
--random-seed=239687165614427705433447704824745784831 
src/sage/graphs/generators/random.py

[217 tests, 7.83 s]

sage -t --warn-long 22.9 
--random-seed=239687165614427705433447704824745784831 
src/sage/graphs/generators/chessboard.py

[42 tests, 0.30 s]

sage -t --warn-long 22.9 
--random-seed=239687165614427705433447704824745784831 
src/sage/graphs/generators/basic.py

[171 tests, 4.28 s]

sage -t --warn-long 22.9 
--random-seed=239687165614427705433447704824745784831 
src/sage/graphs/generators/platonic_solids.py

[34 tests, 3.40 s]

sage -t --warn-long 22.9 
--random-seed=239687165614427705433447704824745784831 
src/sage/graphs/generators/intersection.py

[72 tests, 1.27 s]

sage -t --warn-long 22.9 
--random-seed=239687165614427705433447704824745784831 
src/sage/graphs/generators/classical_geometries.py

[144 tests, 3.83 s]

sage -t --warn-long 22.9 
--random-seed=239687165614427705433447704824745784831 
src/sage/graphs/generators/world_map.py

[20 tests, 0.08 s]

--

All tests passed!

--

Total time for all tests: 79.3 seconds

cpu time: 24.5 seconds

cumulative wall time: 61.5 seconds

Features detected for doctesting: 
gap_package_atlasrep,gap_package_design,gap_package_grape,networkx,numpy,sage.combinat,sage.geometry.polyhedron,sage.groups,sage.libs.flint,sage.libs.gap,sage.libs.pari,sage.modules,sage.numerical.mip,sage.plot,sage.rings.finite_rings,sage.rings.number_field,sage.schemes,sage.symbolic,scipy

pytest is not installed in the venv, skip checking tests that rely on it


On Friday, May 3, 2024 at 3:25:41 PM UTC+2 Dima Pasechnik wrote:

> On Fri, May 03, 2024 at 05:47:27AM -0700, david@gmail.com wrote:
> > Thank you for this new release.
> > 
> > With Fedora 39, I have the following issue that I don't observe on macOS 
> > 
> > maserati:/some/path/sage> ./sage -t 
> > src/sage/graphs/generators/smallgraphs.py
> > 
> > too few successful tests, not using stored timings
> > 
> > Running doctests with ID 2024-05-03-12-10-24-1c65d6ef.
> > 
> > Git branch: develop
> > 
> > Git ref: 10.4.beta5
> 

Re: [sage-release] Re: Sage 10.4.beta5 released

[dimpase]

On Fri, May 03, 2024 at 05:47:27AM -0700, david@gmail.com wrote:
> Thank you for this new release.
> 
> With Fedora 39, I have the following issue that I don't observe on macOS 
> 
> maserati:/some/path/sage> ./sage -t 
> src/sage/graphs/generators/smallgraphs.py
> 
> too few successful tests, not using stored timings
> 
> Running doctests with ID 2024-05-03-12-10-24-1c65d6ef.
> 
> Git branch: develop
> 
> Git ref: 10.4.beta5
> 
> Running with SAGE_LOCAL='/home/dcoudert/sage/local' and 
> SAGE_VENV='/home/dcoudert/sage/local/var/lib/sage/venv-python3.12'
> 
> Using 
> --optional=benzene,bliss,buckygen,csdp,dot2tex,fedora,gap_packages,glucose,igraph,libsemigroups,mcqd,pip,plantri,python_igraph,sage,sage_spkg,tdlib,texttable
> 
> Features to be detected: 
> 4ti2,SAGE_SRC,benzene,bliss,buckygen,conway_polynomials,csdp,cvxopt,cvxopt,database_cremona_ellcurve,database_cremona_mini_ellcurve,database_cubic_hecke,database_ellcurves,database_graphs,database_jones_numfield,database_knotinfo,dvipng,ecm,fpylll,fricas,gap_package_atlasrep,gap_package_design,gap_package_grape,gap_package_guava,gap_package_hap,gap_package_polycyclic,gap_package_qpa,gap_package_quagroup,gfan,graphviz,imagemagick,ipython,jmol,jupymake,kenzo,latte_int,lrcalc_python,lrslib,matroid_database,mcqd,meataxe,mpmath,msolve,nauty,networkx,numpy,palp,pandoc,pdf2svg,pdftocairo,pexpect,phitigra,pillow,plantri,polytopes_db,polytopes_db_4d,pplpy,primecountpy,ptyprocess,pynormaliz,pyparsing,python_igraph,requests,rubiks,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.groups,sage.libs.braiding,sage.libs.ecl,sage.libs.flint,sage.libs.gap,sage.libs.linbox,sage.libs.m4ri,sage.libs.ntl,sage.libs.pari,sage.libs.singular,sage.misc.cython,sage.modular,sage.modules,sage.numerical.mip,sage.plot,sage.rings.complex_double,sage.rings.finite_rings,sage.rings.function_field,sage.rings.number_field,sage.rings.padics,sage.rings.polynomial.pbori,sage.rings.real_double,sage.rings.real_mpfr,sage.sat,sage.schemes,sage.symbolic,sage_numerical_backends_coin,sagemath_doc_html,scipy,singular,sphinx,symengine_py,sympy,tdlib,threejs
> 
> Doctesting 1 file.
> 
> sage -t --random-seed=97244284769564606085961768045450911646 
> src/sage/graphs/generators/smallgraphs.py
> 
> Timed out (and interrupt failed)
> 
> **
> 
> 
> --
> 
> sage -t --random-seed=97244284769564606085961768045450911646 
> src/sage/graphs/generators/smallgraphs.py  # Timed out (and interrupt 
> failed)
> 
> --
> 
> Total time for all tests: 660.1 seconds
> 
> cpu time: 0.0 seconds
> 
> cumulative wall time: 0.0 seconds
> 
> Features detected for doctesting: 
> networkx,sage.geometry.polyhedron,sage.groups,sage.libs.pari,sage.modules,sage.numerical.mip,sage.plot,sage.rings.finite_rings,sage.rings.number_field,sage.symbolic
> 
> pytest is not installed in the venv, skip checking tests that rely on it
> 
> 
> Same issue with
> 
> sage -t --random-seed=76417292471192601569274824800602906818 
> src/sage/graphs/strongly_regular_db.pyx  # Timed out (and interrupt failed)
> 
> sage -t --random-seed=76417292471192601569274824800602906818 
> src/sage/graphs/generators/classical_geometries.py  # Timed out (and 
> interrupt failed)
> 
> sage -t --random-seed=76417292471192601569274824800602906818 
> src/sage/graphs/generators/distance_regular.pyx  # Timed out (and interrupt 
> failed)
> 
> sage -t --random-seed=76417292471192601569274824800602906818 
> src/sage/graphs/generators/smallgraphs.py  # Timed out (and interrupt 
> failed)
> 
> 
> I don't know what's going on.

Do we officially support Python 3.12 ?

Anyway, it would be useful to see where exactly these tests time out.

Dima

> 
> David.
> 
> On Friday, May 3, 2024 at 1:08:14 AM UTC+2 Volker Braun wrote:
> 
> > As always, you can get the latest beta version from the "develop" git 
> > branch. Alternatively, the self-contained source tarball is at 
> > http://www.sagemath.org/download-latest.html
> >
> >
> > 744939e037a (github/develop, tag: 10.4.beta5) Updated SageMath version to 
> > 10.4.beta5
> > e77b3df44ad gh-37915: Replace doctests from jacobian_khuri_makdisi.py 
> > taking too long time
> > 422c59e95ce gh-37911: Fix overflow in hypergeometric trace
> > 67f26757bcb gh-37904: Change `SetSystem` representation
> > a1354a74b91 gh-37883: gap: don't use deprecated LaTeX() and LaTeXObj()
> > 53566be0ca2 gh-37882: eclib: fix doctests after 20240408 update
> > 31cf6d3b0fa gh-37872: sage.{topology,homology}: Remove deprecated chomp 
> > interface
> > 75c86c8f28c gh-37870: `sage.ext`: Remove deprecated code
> > c46302c3a6d gh-37868: `sage.misc.misc`: Remove deprecated code
> > b14d3ec8dc3 gh-37856: `sage.misc.dist`: Remove; deprecated in #30207 (2022)
> > 6753fbdecdc gh-37855: `sage.misc.package`: Remove deprecated code
> > 9ce51d09089 gh-37853: 

[sage-release] Re: Sage 10.4.beta5 released

[david....@gmail.com]

Thank you for this new release.

With Fedora 39, I have the following issue that I don't observe on macOS 

maserati:/some/path/sage> ./sage -t 
src/sage/graphs/generators/smallgraphs.py

too few successful tests, not using stored timings

Running doctests with ID 2024-05-03-12-10-24-1c65d6ef.

Git branch: develop

Git ref: 10.4.beta5

Running with SAGE_LOCAL='/home/dcoudert/sage/local' and 
SAGE_VENV='/home/dcoudert/sage/local/var/lib/sage/venv-python3.12'

Using 
--optional=benzene,bliss,buckygen,csdp,dot2tex,fedora,gap_packages,glucose,igraph,libsemigroups,mcqd,pip,plantri,python_igraph,sage,sage_spkg,tdlib,texttable

Features to be detected: 
4ti2,SAGE_SRC,benzene,bliss,buckygen,conway_polynomials,csdp,cvxopt,cvxopt,database_cremona_ellcurve,database_cremona_mini_ellcurve,database_cubic_hecke,database_ellcurves,database_graphs,database_jones_numfield,database_knotinfo,dvipng,ecm,fpylll,fricas,gap_package_atlasrep,gap_package_design,gap_package_grape,gap_package_guava,gap_package_hap,gap_package_polycyclic,gap_package_qpa,gap_package_quagroup,gfan,graphviz,imagemagick,ipython,jmol,jupymake,kenzo,latte_int,lrcalc_python,lrslib,matroid_database,mcqd,meataxe,mpmath,msolve,nauty,networkx,numpy,palp,pandoc,pdf2svg,pdftocairo,pexpect,phitigra,pillow,plantri,polytopes_db,polytopes_db_4d,pplpy,primecountpy,ptyprocess,pynormaliz,pyparsing,python_igraph,requests,rubiks,sage.combinat,sage.geometry.polyhedron,sage.graphs,sage.groups,sage.libs.braiding,sage.libs.ecl,sage.libs.flint,sage.libs.gap,sage.libs.linbox,sage.libs.m4ri,sage.libs.ntl,sage.libs.pari,sage.libs.singular,sage.misc.cython,sage.modular,sage.modules,sage.numerical.mip,sage.plot,sage.rings.complex_double,sage.rings.finite_rings,sage.rings.function_field,sage.rings.number_field,sage.rings.padics,sage.rings.polynomial.pbori,sage.rings.real_double,sage.rings.real_mpfr,sage.sat,sage.schemes,sage.symbolic,sage_numerical_backends_coin,sagemath_doc_html,scipy,singular,sphinx,symengine_py,sympy,tdlib,threejs

Doctesting 1 file.

sage -t --random-seed=97244284769564606085961768045450911646 
src/sage/graphs/generators/smallgraphs.py

Timed out (and interrupt failed)

**


--

sage -t --random-seed=97244284769564606085961768045450911646 
src/sage/graphs/generators/smallgraphs.py  # Timed out (and interrupt 
failed)

--

Total time for all tests: 660.1 seconds

cpu time: 0.0 seconds

cumulative wall time: 0.0 seconds

Features detected for doctesting: 
networkx,sage.geometry.polyhedron,sage.groups,sage.libs.pari,sage.modules,sage.numerical.mip,sage.plot,sage.rings.finite_rings,sage.rings.number_field,sage.symbolic

pytest is not installed in the venv, skip checking tests that rely on it


Same issue with

sage -t --random-seed=76417292471192601569274824800602906818 
src/sage/graphs/strongly_regular_db.pyx  # Timed out (and interrupt failed)

sage -t --random-seed=76417292471192601569274824800602906818 
src/sage/graphs/generators/classical_geometries.py  # Timed out (and 
interrupt failed)

sage -t --random-seed=76417292471192601569274824800602906818 
src/sage/graphs/generators/distance_regular.pyx  # Timed out (and interrupt 
failed)

sage -t --random-seed=76417292471192601569274824800602906818 
src/sage/graphs/generators/smallgraphs.py  # Timed out (and interrupt 
failed)


I don't know what's going on.

David.

On Friday, May 3, 2024 at 1:08:14 AM UTC+2 Volker Braun wrote:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
>
> 744939e037a (github/develop, tag: 10.4.beta5) Updated SageMath version to 
> 10.4.beta5
> e77b3df44ad gh-37915: Replace doctests from jacobian_khuri_makdisi.py 
> taking too long time
> 422c59e95ce gh-37911: Fix overflow in hypergeometric trace
> 67f26757bcb gh-37904: Change `SetSystem` representation
> a1354a74b91 gh-37883: gap: don't use deprecated LaTeX() and LaTeXObj()
> 53566be0ca2 gh-37882: eclib: fix doctests after 20240408 update
> 31cf6d3b0fa gh-37872: sage.{topology,homology}: Remove deprecated chomp 
> interface
> 75c86c8f28c gh-37870: `sage.ext`: Remove deprecated code
> c46302c3a6d gh-37868: `sage.misc.misc`: Remove deprecated code
> b14d3ec8dc3 gh-37856: `sage.misc.dist`: Remove; deprecated in #30207 (2022)
> 6753fbdecdc gh-37855: `sage.misc.package`: Remove deprecated code
> 9ce51d09089 gh-37853: Work around inconsistent iteration in 
> `multi_polynomial_sequence.py`
> 969b687c5f6 gh-37851: Fix issue 37587 regarding the Link class plot method
> 620babd49fb gh-37841: `.ci/write-dockerfile.sh`: Move here from build/bin/
> af6c2085804 gh-37836: fricas/do not get inputform twice
> ac9c1b07203 gh-37835: Optimize `DisjointSet`
> 6e58d87dcc1 gh-37833: