I had exactly the same error. I solved it by reinstall gnome-keyring
since the autostart applications where somehow messed up.

dpkg --force-all -P gnome-keyring
aptitude install gnome-keyring

So I got my startup file /etc/xdg/autostart/gnome-keyring-ssh.desktop
back and gnome-session-properties showed gnome-keyring-ssh in the list
again.

What I did before was to manually add the gnome-keyring-ssh with 
"/usr/bin/gnome-keyring-daemon --start --components=ssh" as exec command with 
use of gnome-session-properties. This command seemed to work well since I saw 
that gnome-keyring-daemon --start reported 
SSH_AUTH_SOCK=/tmp/keyring-IzvzoK/ssh.
I have no idea why that didn't work and reinstalling gnome-keyring with the 
missing autostart scripts worked. I guess I must have missed some extra Options 
like "X-GNOME-Autostart-Phase=Initialization", hence the ssh-agent was 
registered to the system too late within the startup progress. And i don't know 
why the files were missing in first place either.

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https://bugs.launchpad.net/bugs/745245

Title:
  Seahorse cannot set up SSH keys for login servers

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