at 5:34 PM
To: Andrew Davidson
Cc: Andrew Melo , Bjørn Jørgensen
, "user @spark"
Subject: Re: How is union() implemented? Need to implement column bind
Wait, how is all that related to cbind -- very different from what's needed to
insert.
BigQuery is unrelated to MR or Spark. It
.
Kind regards
Andy
From: Sean Owen
Date: Wednesday, April 20, 2022 at 2:31 PM
To: Andrew Melo
Cc: Andrew Davidson , Bjørn Jørgensen
, "user @spark"
Subject: Re: How is union() implemented? Need to implement column bind
I don't think there's fundamental disapproval (it is implemented i
it spark
will work well for our need
Kind regards
Andy
From: Sean Owen
Date: Monday, April 18, 2022 at 6:58 PM
To: Andrew Davidson
Cc: "user @spark"
Subject: Re: How is union() implemented? Need to implement column bind
A join is the natural answer, but this is a 10114-way join, whic
Hi have a hard problem
I have 10114 column vectors each in a separate file. The file has 2 columns,
the row id, and numeric values. The row ids are identical and in sort order.
All the column vectors have the same number of rows. There are over 5 million
rows. I need to combine them into a
: Tuesday, March 15, 2022 at 2:19 PM
To: Andrew Davidson
Cc: Mich Talebzadeh , "user @spark"
Subject: Re: pivoting panda dataframe
Hi Andrew. Mitch asked, and I answered transpose()
https://spark.apache.org/docs/latest/api/python/reference/pyspark.pandas/api/pyspark.pandas.DataFrame.tran
Hi Bjorn
I have been looking for spark transform for a while. Can you send me a link to
the pyspark function?
I assume pandas transform is not really an option. I think it will try to pull
the entire dataframe into the drivers memory.
Kind regards
Andy
p.s. My real problem is that spark
at 8:19 AM
To: Andrew Davidson
Cc: "user @spark"
Subject: Re: Does spark have something like rowsum() in R?
It really depends on what is running out of memory. You can have all the
workers in the world but if something is blowing up the driver, won't do
anything. You can have a hu
ternatives in R and Spark; in other languages
you might more directly get the array of (numeric?) row value and sum them
efficiently. Certainly pandas UDFs would make short work of that.
On Tue, Feb 8, 2022 at 10:02 AM Andrew Davidson
wrote:
As part of my data normalization process I need to cal
As part of my data normalization process I need to calculate row sums. The
following code works on smaller test data sets. It does not work on my big
tables. When I run on a table with over 10,000 columns I get an OOM on a
cluster with 2.8 TB. Is there a better way to implement this
Kind
I need to create a single table by selecting one column from thousands of
files. The columns are all of the same type, have the same number of rows and
rows names. I am currently using join. I get OOM on mega-mem cluster with 2.8
TB.
Does spark have something like cbind() “Take a sequence of
/a/54283997/4586180
retDF = countsSparkDF.na.fill( 0 ).withColumn( newColName , reduce(
add, [col( x ) for x in columnNames] ) )
self.logger.warn( "rowSumsImpl END\n" )
return retDF
From: Mich Talebzadeh
Date: Monday, January 24, 2022 at 12:54 AM
To: Andrew Dav
Hi recently started using GCP dataproc spark.
Seem to have trouble getting big jobs to complete. I am using check points. I
am wondering if maybe I should look for another cloud solution
Kind regards
Andy
regards
Andy
From: Andrew Davidson
Date: Thursday, January 20, 2022 at 2:32 PM
To: "user @spark"
Subject: How to configure log4j in pyspark to get log level, file name, and
line number
Hi
When I use python logging for my unit test. I am able to control the output
format. I get the
There is a ton of great info in this archive. I noticed when I do a google
search it does not seem to find results from this source
Kind regards
Andy
Hi
When I use python logging for my unit test. I am able to control the output
format. I get the log level, the file and line number, then the msg
[INFO testEstimatedScalingFactors.py:166 - test_B_convertCountsToInts()] BEGIN
In my spark driver I am able to get the log4j logger
spark
Hi
I have a dataframe of integers. It has 10409 columns. How can I sum across each
row?
I get a very long stack trace
rowSums BEGIN
2022-01-20 22:11:24 ERROR __main__:? - An error occurred while calling
o93935.withColumn.
: java.lang.StackOverflowError
at
Thanks!
I will take a look
Andy
From: Gourav Sengupta
Date: Tuesday, January 11, 2022 at 8:42 AM
To: Andrew Davidson
Cc: Andrew Davidson , "user @spark"
Subject: Re: How to add a row number column with out reordering my data frame
Hi,
I do not think we need to do any of that.
functions.monotonically_increasing_id.html
The generated ID is guaranteed to be monotonically increasing and unique, but
not consecutive.
Comments and suggestions appreciated
Andy
From: Gourav Sengupta
Date: Monday, January 10, 2022 at 11:03 AM
To: Andrew Davidson
Cc: "user @spark"
Su
Hi
I am trying to work through a OOM error. I have 10411 files. I want to select a
single column from each file and then join them into a single table.
The files have a row unique id. However it is a very long string. The data file
with just the name and column of interest is about 470 M. The
Thanks Sean
Andy
From: Sean Owen
Date: Wednesday, January 5, 2022 at 3:38 PM
To: Andrew Davidson , Nicholas Gustafson
Cc: "user @spark"
Subject: Re: Newbie pyspark memory mgmt question
There is no memory leak, no. You can .cache() or .persist() DataFrames, and
that can use me
Hi
I am running into OOM problems. My cluster should be much bigger than I need. I
wonder if it has to do with the way I am writing my code. Below are three style
cases. I wonder if they cause memory to be leaked?
Case 1 :
df1 = spark.read.load( cvs file)
df1 = df1.someTransform()
df1 =
#rawCountsSDF.explain()
self.logger.info( "END\n" )
return retNumReadsDF
From: David Diebold
Date: Monday, January 3, 2022 at 12:39 AM
To: Andrew Davidson , "user @spark"
Subject: Re: Pyspark debugging best practices
Hello Andy,
Are you sure you wa
:
> Hi Andrew,
>
> Any chance you might give Databricks a try in GCP?
>
> The above transformations look complicated to me, why are you adding
> dataframes to a list?
>
>
> Regards,
> Gourav Sengupta
>
>
>
> On Sun, Dec 26, 2021 at 7:00 PM Andrew Davidson
Hi
I am having trouble debugging my driver. It runs correctly on smaller data set
but fails on large ones. It is very hard to figure out what the bug is. I
suspect it may have something do with the way spark is installed and
configured. I am using google cloud platform dataproc pyspark
The
Hi
Below is typical pseudo code I find myself writing over and over again. There
is only a single action at the very end of the program. The early narrow
transformations potentially hold on to a lot of needless data. I have a for
loop over join. (ie wide transformation). Followed by a bunch
;
>>> Thanks, here's the Github repo to the code and the publication :
>>> https://github.com/SamSmithDevs10/paperReplicationForReview
>>>
>>> Kind regards
>>>
>>> Le jeu. 23 déc. 2021 à 17:58, Andrew Davidson a
>>> écrit :
>>>
te: Friday, December 24, 2021 at 8:30 AM
To: Gourav Sengupta
Cc: Andrew Davidson , Nicholas Gustafson
, User
Subject: Re: AnalysisException: Trouble using select() to append multiple
columns
(that's not the situation below we are commenting on)
On Fri, Dec 24, 2021, 9:28 AM Gourav Sengupta
mail
Hi Sam
Can you tell us more? What is the algorithm? Can you send us the URL the
publication
Kind regards
Andy
From: sam smith
Date: Wednesday, December 22, 2021 at 10:59 AM
To: "user@spark.apache.org"
Subject: About some Spark technical help
Hello guys,
I am replicating a paper's
ew with name "rawCounts", spark3 would uncache the
> previous "rawCounts".
>
> Correct me if I'm wrong.
>
> Regards
>
>
> On Tue, Dec 21, 2021 at 10:05 PM Andrew Davidson
> wrote:
>
>> Happy Holidays
>>
>>
>>
>>
Happy Holidays
I am a newbie
I have 16,000 data files, all files have the same number of rows and columns.
The row ids are identical and are in the same order. I want to create a new
data frame that contains the 3rd column from each data file. My pyspark script
runs correctly when I test on
Thanks Nicholas
Andy
From: Nicholas Gustafson
Date: Friday, December 17, 2021 at 6:12 PM
To: Andrew Davidson
Cc: "user@spark.apache.org"
Subject: Re: AnalysisException: Trouble using select() to append multiple
columns
Since df1 and df2 are different DataFrames, you will need to
Hi I am a newbie
I have 16,000 data files, all files have the same number of rows and columns.
The row ids are identical and are in the same order. I want to create a new
data frame that contains the 3rd column from each data file
I wrote a test program that uses a for loop and Join. It works
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