Re: ??? INFO CreateViewCommand:57 - Try to uncache `rawCounts` before replacing.

2021-12-21 Thread Sean Owen
nd are in the same order. I want to >>> create a new data frame that contains the 3rd column from each data file. >>> My pyspark script runs correctly when I test on small number of files how >>> ever I get an OOM when I run on all 16000. >>> >>&g

Re: ??? INFO CreateViewCommand:57 - Try to uncache `rawCounts` before replacing.

2021-12-21 Thread Andrew Davidson
pt runs correctly when I test on small number of files how >> ever I get an OOM when I run on all 16000. >> >> >> >> To try and debug I ran a small test and set warning level to INFO. I >> found the following >> >> >> >>

Re: ??? INFO CreateViewCommand:57 - Try to uncache `rawCounts` before replacing.

2021-12-21 Thread Jun Zhu
all test and set warning level to INFO. I found > the following > > > > 2021-12-21 00:47:04 INFO CreateViewCommand:57 - Try to uncache > `rawCounts` before replacing. > > > > for i in range( 1, len( self.sampleNamesList ) ): > > sampleName = s

??? INFO CreateViewCommand:57 - Try to uncache `rawCounts` before replacing.

2021-12-20 Thread Andrew Davidson
on small number of files how ever I get an OOM when I run on all 16000. To try and debug I ran a small test and set warning level to INFO. I found the following 2021-12-21 00:47:04 INFO CreateViewCommand:57 - Try to uncache `rawCounts` before replacing. for i in range( 1, len