Which version / distribution are you using? Please references this blog that Felix C posted if you’re running on CDH. http://eradiating.wordpress.com/2015/02/22/getting-hivecontext-to-work-in-cdh/
Or you may also need to download the datanucleus*.jar files try to add the option of “--jars” while starting the spark shell. From: Anusha Shamanur [mailto:anushas...@gmail.com] Sent: Wednesday, March 4, 2015 5:07 AM To: Cheng, Hao Subject: Re: Spark SQL Thrift Server start exception : java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory Hi, I am getting the same error. There is no lib folder in my $SPARK_HOME. But I included these jars while calling spark-shell. Now, I get this: Caused by: org.datanucleus.exceptions.ClassNotResolvedException: Class "org.datanucleus.store.rdbms.RDBMSStoreManager" was not found in the CLASSPATH. Please check your specification and your CLASSPATH. at org.datanucleus.ClassLoaderResolverImpl.classForName(ClassLoaderResolverImpl.java:218) How do I solve this? On Mon, Mar 2, 2015 at 11:04 PM, Cheng, Hao <hao.ch...@intel.com<mailto:hao.ch...@intel.com>> wrote: Copy those jars into the $SPARK_HOME/lib/ datanucleus-api-jdo-3.2.6.jar datanucleus-core-3.2.10.jar datanucleus-rdbms-3.2.9.jar see https://github.com/apache/spark/blob/master/bin/compute-classpath.sh#L120 -----Original Message----- From: fanooos [mailto:dev.fano...@gmail.com<mailto:dev.fano...@gmail.com>] Sent: Tuesday, March 3, 2015 2:50 PM To: user@spark.apache.org<mailto:user@spark.apache.org> Subject: Spark SQL Thrift Server start exception : java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory I have installed a hadoop cluster (version : 2.6.0), apache spark (version : 1.2.1 preBuilt for hadoop 2.4 and later), and hive (version 1.0.0). When I try to start the spark sql thrift server I am getting the following exception. Exception in thread "main" java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:346) at org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:235) at org.apache.spark.sql.hive.HiveContext$$anonfun$4.apply(HiveContext.scala:231) at scala.Option.orElse(Option.scala:257) at org.apache.spark.sql.hive.HiveContext.x$3$lzycompute(HiveContext.scala:231) at org.apache.spark.sql.hive.HiveContext.x$3(HiveContext.scala:229) at org.apache.spark.sql.hive.HiveContext.hiveconf$lzycompute(HiveContext.scala:229) at org.apache.spark.sql.hive.HiveContext.hiveconf(HiveContext.scala:229) at org.apache.spark.sql.hive.HiveContext.runHive(HiveContext.scala:292) at org.apache.spark.sql.hive.HiveContext.runSqlHive(HiveContext.scala:276) at org.apache.spark.sql.hive.HiveContext.setConf(HiveContext.scala:248) at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:91) at org.apache.spark.sql.SQLContext$$anonfun$2.apply(SQLContext.scala:90) at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108) at org.apache.spark.sql.SQLContext.<init>(SQLContext.scala:90) at org.apache.spark.sql.hive.HiveContext.<init>(HiveContext.scala:72) at org.apache.spark.sql.hive.thriftserver.SparkSQLEnv$.init(SparkSQLEnv.scala:51) at org.apache.spark.sql.hive.thriftserver.HiveThriftServer2$.main(HiveThriftServer2.scala:56) at org.apache.spark.sql.hive.thriftserver.HiveThriftServer2.main(HiveThriftServer2.scala) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.spark.deploy.SparkSubmit$.launch(SparkSubmit.scala:358) at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:75) at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala) Caused by: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.metastore.HiveMetaStoreClient at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1412) at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:62) at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:72) at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:2453) at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:2465) at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:340) ... 26 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:526) at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1410) ... 31 more Caused by: javax.jdo.JDOFatalUserException: Class org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found. NestedThrowables: java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1175) at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808) at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701) at org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:310) at org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:339) at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:248) at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:223) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:58) at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:67) at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:497) at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:475) at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:523) at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:397) at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.<init>(HiveMetaStore.java:356) at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:54) at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:59) at org.apache.hadoop.hive.metastore.HiveMetaStore.newHMSHandler(HiveMetaStore.java:4944) at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:171) ... 36 more Caused by: java.lang.ClassNotFoundException: org.datanucleus.api.jdo.JDOPersistenceManagerFactory at java.net.URLClassLoader$1.run(URLClassLoader.java:366) at java.net.URLClassLoader$1.run(URLClassLoader.java:355) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:354) at java.lang.ClassLoader.loadClass(ClassLoader.java:425) at java.lang.ClassLoader.loadClass(ClassLoader.java:358) at java.lang.Class.forName0(Native Method) at java.lang.Class.forName(Class.java:274) at javax.jdo.JDOHelper$18.run(JDOHelper.java:2018) at javax.jdo.JDOHelper$18.run(JDOHelper.java:2016) at java.security.AccessController.doPrivileged(Native Method) at javax.jdo.JDOHelper.forName(JDOHelper.java:2015) at javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1162) ... 55 more As I understand from the exception, the datanucleus jars is not in the ClassPath so I added the following line to my .profile export $SPARK_OPTS="-Djava.library.path=$SPARK_HOME/lib" but the same exception still thrown and the server does not run. How can I solve this issue ? -- View this message in context: http://apache-spark-user-list.1001560.n3.nabble.com/Spark-SQL-Thrift-Server-start-exception-java-lang-ClassNotFoundException-org-datanucleus-api-jdo-JDOy-tp21887.html Sent from the Apache Spark User List mailing list archive at Nabble.com. --------------------------------------------------------------------- To unsubscribe, e-mail: user-unsubscr...@spark.apache.org<mailto:user-unsubscr...@spark.apache.org> For additional commands, e-mail: user-h...@spark.apache.org<mailto:user-h...@spark.apache.org> --------------------------------------------------------------------- To unsubscribe, e-mail: user-unsubscr...@spark.apache.org<mailto:user-unsubscr...@spark.apache.org> For additional commands, e-mail: user-h...@spark.apache.org<mailto:user-h...@spark.apache.org> -- Regards, Anusha
