I am running Spark on a HortonWorks HDP Cluster. I have deployed there
prebuilt version but it is only for Spark 1.2.0 not 1.2.1 and there are a
few fixes and features in there that I would like to leverage.
I just downloaded the spark-1.2.1 source and built it to support Hadoop 2.6
by doing the following:
radtech:spark-1.2.1 tnist$ ./make-distribution.sh --name hadoop2.6
--tgz -Pyarn -Phadoop-2.4 -Dhadoop.version=2.6.0 -Phive
-Phive-thriftserver -DskipTests clean package
When I deploy this to my hadoop cluster and kick of a spark-shell,
$> spark-1.2.1-bin-hadoop2.6]# ./bin/spark-shell --master yarn-client
--driver-memory 512m --executor-memory 512m
Results in java.lang.NoClassDefFoundError:
org/codehaus/jackson/map/deser/std/StdDeserializer
The full stack trace is below. I have validate that the
$SPARK_HOME/lib/spark-assembly-1.2.1-hadoop2.6.0.jar does infact contain
the class in question:
jar -tvf spark-assembly-1.2.1-hadoop2.6.0.jar | grep
'org/codehaus/jackson/map/deser/std'
...
18002 Thu Mar 05 11:23:04 EST 2015
parquet/org/codehaus/jackson/map/deser/std/StdDeserializer.class
1584 Thu Mar 05 11:23:04 EST 2015
parquet/org/codehaus/jackson/map/deser/std/StdKeyDeserializer$BoolKD.class...
Any guidance on what I missed ? If i start the spark-shell in standalone it
comes up fine, $SPARK_HOME/bin/spark-shell so it looks to be related to
starting it under yarn from what I can tell.
TIA for the assistance.
-Todd
Stack Trace
15/03/05 12:12:38 INFO spark.SecurityManager: Changing view acls to:
root15/03/05 12:12:38 INFO spark.SecurityManager: Changing modify acls
to: root15/03/05 12:12:38 INFO spark.SecurityManager: SecurityManager:
authentication disabled; ui acls disabled; users with view
permissions: Set(root); users with modify permissions:
Set(root)15/03/05 12:12:38 INFO spark.HttpServer: Starting HTTP
Server15/03/05 12:12:39 INFO server.Server:
jetty-8.y.z-SNAPSHOT15/03/05 12:12:39 INFO server.AbstractConnector:
Started SocketConnector@0.0.0.0:3617615/03/05 12:12:39 INFO
util.Utils: Successfully started service 'HTTP class server' on port
36176.
Welcome to
____ __
/ __/__ ___ _____/ /__
_\ \/ _ \/ _ `/ __/ '_/
/___/ .__/\_,_/_/ /_/\_\ version 1.2.1
/_/
Using Scala version 2.10.4 (OpenJDK 64-Bit Server VM, Java 1.7.0_75)
Type in expressions to have them evaluated.
Type :help for more information.15/03/05 12:12:43 INFO
spark.SecurityManager: Changing view acls to: root15/03/05 12:12:43
INFO spark.SecurityManager: Changing modify acls to: root15/03/05
12:12:43 INFO spark.SecurityManager: SecurityManager: authentication
disabled; ui acls disabled; users with view permissions: Set(root);
users with modify permissions: Set(root)15/03/05 12:12:44 INFO
slf4j.Slf4jLogger: Slf4jLogger started15/03/05 12:12:44 INFO Remoting:
Starting remoting15/03/05 12:12:44 INFO Remoting: Remoting started;
listening on addresses
:[akka.tcp://sparkdri...@hadoopdev01.opsdatastore.com:50544]15/03/05
12:12:44 INFO util.Utils: Successfully started service 'sparkDriver'
on port 50544.15/03/05 12:12:44 INFO spark.SparkEnv: Registering
MapOutputTracker15/03/05 12:12:44 INFO spark.SparkEnv: Registering
BlockManagerMaster15/03/05 12:12:44 INFO storage.DiskBlockManager:
Created local directory at
/tmp/spark-16402794-cc1e-42d0-9f9c-99f15eaa1861/spark-118bc6af-4008-45d7-a22f-491bcd1856c015/03/05
12:12:44 INFO storage.MemoryStore: MemoryStore started with capacity
265.4 MB15/03/05 12:12:45 WARN util.NativeCodeLoader: Unable to load
native-hadoop library for your platform... using builtin-java classes
where applicable15/03/05 12:12:45 INFO spark.HttpFileServer: HTTP File
server directory is
/tmp/spark-5d7da34c-58d4-4d60-9b6a-3dce43cab39e/spark-4d65aacb-78bd-40fd-b6c0-53b47e28819915/03/05
12:12:45 INFO spark.HttpServer: Starting HTTP Server15/03/05 12:12:45
INFO server.Server: jetty-8.y.z-SNAPSHOT15/03/05 12:12:45 INFO
server.AbstractConnector: Started
SocketConnector@0.0.0.0:5645215/03/05 12:12:45 INFO util.Utils:
Successfully started service 'HTTP file server' on port 56452.15/03/05
12:12:45 INFO server.Server: jetty-8.y.z-SNAPSHOT15/03/05 12:12:45
INFO server.AbstractConnector: Started
SelectChannelConnector@0.0.0.0:404015/03/05 12:12:45 INFO util.Utils:
Successfully started service 'SparkUI' on port 4040.15/03/05 12:12:45
INFO ui.SparkUI: Started SparkUI at
http://hadoopdev01.opsdatastore.com:404015/03/05 12:12:46 INFO
impl.TimelineClientImpl: Timeline service address:
http://hadoopdev02.opsdatastore.com:8188/ws/v1/timeline/
java.lang.NoClassDefFoundError:
org/codehaus/jackson/map/deser/std/StdDeserializer
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:800)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:449)
at java.net.URLClassLoader.access$100(URLClassLoader.java:71)
at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
at
org.apache.hadoop.yarn.webapp.YarnJacksonJaxbJsonProvider.configObjectMapper(YarnJacksonJaxbJsonProvider.java:57)
at
org.apache.hadoop.yarn.util.timeline.TimelineUtils.<clinit>(TimelineUtils.java:47)
at
org.apache.hadoop.yarn.client.api.impl.YarnClientImpl.serviceInit(YarnClientImpl.java:166)
at org.apache.hadoop.service.AbstractService.init(AbstractService.java:163)
at org.apache.spark.deploy.yarn.Client.submitApplication(Client.scala:65)
at
org.apache.spark.scheduler.cluster.YarnClientSchedulerBackend.start(YarnClientSchedulerBackend.scala:57)
at
org.apache.spark.scheduler.TaskSchedulerImpl.start(TaskSchedulerImpl.scala:140)
at org.apache.spark.SparkContext.<init>(SparkContext.scala:348)
at org.apache.spark.repl.SparkILoop.createSparkContext(SparkILoop.scala:986)
at $iwC$$iwC.<init>(<console>:9)
at $iwC.<init>(<console>:18)
at <init>(<console>:20)
at .<init>(<console>:24)
at .<clinit>(<console>)
at .<init>(<console>:7)
at .<clinit>(<console>)
at $print(<console>)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:852)
at
org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1125)
at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:674)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:705)
at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:669)
at org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:828)
at
org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:873)
at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:785)
at
org.apache.spark.repl.SparkILoopInit$$anonfun$initializeSpark$1.apply(SparkILoopInit.scala:123)
at
org.apache.spark.repl.SparkILoopInit$$anonfun$initializeSpark$1.apply(SparkILoopInit.scala:122)
at org.apache.spark.repl.SparkIMain.beQuietDuring(SparkIMain.scala:270)
at
org.apache.spark.repl.SparkILoopInit$class.initializeSpark(SparkILoopInit.scala:122)
at org.apache.spark.repl.SparkILoop.initializeSpark(SparkILoop.scala:60)
at
org.apache.spark.repl.SparkILoop$$anonfun$process$1$$anonfun$apply$mcZ$sp$5.apply$mcV$sp(SparkILoop.scala:945)
at
org.apache.spark.repl.SparkILoopInit$class.runThunks(SparkILoopInit.scala:147)
at org.apache.spark.repl.SparkILoop.runThunks(SparkILoop.scala:60)
at
org.apache.spark.repl.SparkILoopInit$class.postInitialization(SparkILoopInit.scala:106)
at org.apache.spark.repl.SparkILoop.postInitialization(SparkILoop.scala:60)
at
org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply$mcZ$sp(SparkILoop.scala:962)
at
org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply(SparkILoop.scala:916)
at
org.apache.spark.repl.SparkILoop$$anonfun$process$1.apply(SparkILoop.scala:916)
at
scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135)
at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:916)
at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1011)
at org.apache.spark.repl.Main$.main(Main.scala:31)
at org.apache.spark.repl.Main.main(Main.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.spark.deploy.SparkSubmit$.launch(SparkSubmit.scala:358)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:75)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: java.lang.ClassNotFoundException:
org.codehaus.jackson.map.deser.std.StdDeserializer
at java.net.URLClassLoader$1.run(URLClassLoader.java:366)
at java.net.URLClassLoader$1.run(URLClassLoader.java:355)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:354)
at java.lang.ClassLoader.loadClass(ClassLoader.java:425)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:308)
at java.lang.ClassLoader.loadClass(ClassLoader.java:358)
... 66 more
scala> exit
