Thanks Yin, that seems to work with the Shell. But on a compiled application with Spark-submit it still fails with the same exception.
On Thu, Jun 4, 2015 at 2:46 PM, Yin Huai <yh...@databricks.com> wrote: > Can you put the following setting in spark-defaults.conf and try again? > > spark.sql.hive.metastore.sharedPrefixes > com.mysql.jdbc,org.postgresql,com.microsoft.sqlserver,oracle.jdbc,com.mapr.fs.shim.LibraryLoader,com.mapr.security.JNISecurity,com.mapr.fs.jni > > https://issues.apache.org/jira/browse/SPARK-7819 has more context about > it. > > On Wed, Jun 3, 2015 at 9:38 PM, Night Wolf <nightwolf...@gmail.com> wrote: > >> Hi all, >> >> Trying out Spark 1.4 RC4 on MapR4/Hadoop 2.5.1 running in yarn-client >> mode with Hive support. >> >> *Build command;* >> ./make-distribution.sh --name mapr4.0.2_yarn_j6_2.10 --tgz -Pyarn -Pmapr4 >> -Phadoop-2.4 -Pmapr4 -Phive -Phadoop-provided >> -Dhadoop.version=2.5.1-mapr-1501 -Dyarn.version=2.5.1-mapr-1501 -DskipTests >> -e -X >> >> >> When trying to run a hive query in the spark shell *sqlContext.sql("show >> tables")* I get the following exception; >> >> scala> sqlContext.sql("show tables") >> 15/06/04 04:33:16 INFO hive.HiveContext: Initializing >> HiveMetastoreConnection version 0.13.1 using Spark classes. >> java.lang.reflect.InvocationTargetException >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> at java.lang.reflect.Method.invoke(Method.java:606) >> at com.mapr.fs.ShimLoader.loadNativeLibrary(ShimLoader.java:323) >> at com.mapr.fs.ShimLoader.load(ShimLoader.java:198) >> at >> org.apache.hadoop.conf.CoreDefaultProperties.<clinit>(CoreDefaultProperties.java:59) >> at java.lang.Class.forName0(Native Method) >> at java.lang.Class.forName(Class.java:274) >> at >> org.apache.hadoop.conf.Configuration.getClassByNameOrNull(Configuration.java:1857) >> at >> org.apache.hadoop.conf.Configuration.getProperties(Configuration.java:2072) >> at >> org.apache.hadoop.conf.Configuration.loadResource(Configuration.java:2282) >> at >> org.apache.hadoop.conf.Configuration.loadResources(Configuration.java:2234) >> at org.apache.hadoop.conf.Configuration.getProps(Configuration.java:2151) >> at org.apache.hadoop.conf.Configuration.set(Configuration.java:1002) >> at org.apache.hadoop.conf.Configuration.set(Configuration.java:974) >> at org.apache.hadoop.mapred.JobConf.setJar(JobConf.java:518) >> at org.apache.hadoop.mapred.JobConf.setJarByClass(JobConf.java:536) >> at org.apache.hadoop.mapred.JobConf.<init>(JobConf.java:430) >> at org.apache.hadoop.hive.conf.HiveConf.initialize(HiveConf.java:1366) >> at org.apache.hadoop.hive.conf.HiveConf.<init>(HiveConf.java:1332) >> at >> org.apache.spark.sql.hive.client.ClientWrapper.<init>(ClientWrapper.scala:99) >> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) >> at >> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) >> at >> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) >> at java.lang.reflect.Constructor.newInstance(Constructor.java:526) >> at >> org.apache.spark.sql.hive.client.IsolatedClientLoader.liftedTree1$1(IsolatedClientLoader.scala:170) >> at >> org.apache.spark.sql.hive.client.IsolatedClientLoader.<init>(IsolatedClientLoader.scala:166) >> at >> org.apache.spark.sql.hive.HiveContext.metadataHive$lzycompute(HiveContext.scala:212) >> at >> org.apache.spark.sql.hive.HiveContext.metadataHive(HiveContext.scala:175) >> at >> org.apache.spark.sql.hive.HiveContext$$anon$2.<init>(HiveContext.scala:370) >> at >> org.apache.spark.sql.hive.HiveContext.catalog$lzycompute(HiveContext.scala:370) >> at org.apache.spark.sql.hive.HiveContext.catalog(HiveContext.scala:369) >> at >> org.apache.spark.sql.hive.HiveContext$$anon$1.<init>(HiveContext.scala:382) >> at >> org.apache.spark.sql.hive.HiveContext.analyzer$lzycompute(HiveContext.scala:382) >> at org.apache.spark.sql.hive.HiveContext.analyzer(HiveContext.scala:381) >> at >> org.apache.spark.sql.SQLContext$QueryExecution.assertAnalyzed(SQLContext.scala:901) >> at org.apache.spark.sql.DataFrame.<init>(DataFrame.scala:131) >> at org.apache.spark.sql.DataFrame$.apply(DataFrame.scala:51) >> at org.apache.spark.sql.SQLContext.sql(SQLContext.scala:725) >> at >> $line37.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:21) >> at $line37.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:26) >> at $line37.$read$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:28) >> at $line37.$read$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:30) >> at $line37.$read$$iwC$$iwC$$iwC$$iwC.<init>(<console>:32) >> at $line37.$read$$iwC$$iwC$$iwC.<init>(<console>:34) >> at $line37.$read$$iwC$$iwC.<init>(<console>:36) >> at $line37.$read$$iwC.<init>(<console>:38) >> at $line37.$read.<init>(<console>:40) >> at $line37.$read$.<init>(<console>:44) >> at $line37.$read$.<clinit>(<console>) >> at $line37.$eval$.<init>(<console>:7) >> at $line37.$eval$.<clinit>(<console>) >> at $line37.$eval.$print(<console>) >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> at java.lang.reflect.Method.invoke(Method.java:606) >> at >> org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065) >> at >> org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1338) >> at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840) >> at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871) >> at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819) >> at >> org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:857) >> at >> org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:902) >> at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:814) >> at org.apache.spark.repl.SparkILoop.processLine$1(SparkILoop.scala:657) >> at org.apache.spark.repl.SparkILoop.innerLoop$1(SparkILoop.scala:665) >> at org.apache.spark.repl.SparkILoop.org >> $apache$spark$repl$SparkILoop$$loop(SparkILoop.scala:670) >> at >> org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply$mcZ$sp(SparkILoop.scala:997) >> at >> org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945) >> at >> org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945) >> at >> scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135) >> at org.apache.spark.repl.SparkILoop.org >> $apache$spark$repl$SparkILoop$$process(SparkILoop.scala:945) >> at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1059) >> at org.apache.spark.repl.Main$.main(Main.scala:31) >> at org.apache.spark.repl.Main.main(Main.scala) >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> at java.lang.reflect.Method.invoke(Method.java:606) >> at >> org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:664) >> at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:169) >> at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:192) >> at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:111) >> at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala) >> Caused by: java.lang.UnsatisfiedLinkError: Native Library /tmp/ >> mapr-nw-libMapRClient.1.4.0-SNAPSHOT.so already loaded in another >> classloader >> at java.lang.ClassLoader.loadLibrary1(ClassLoader.java:1931) >> at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1890) >> at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1851) >> at java.lang.Runtime.load0(Runtime.java:795) >> at java.lang.System.load(System.java:1062) >> at com.mapr.fs.shim.LibraryLoader.load(LibraryLoader.java:29) >> ... 86 more >> java.lang.UnsatisfiedLinkError: Native Library /tmp/ >> mapr-nw-libMapRClient.1.4.0-SNAPSHOT.so already loaded in another >> classloader >> at java.lang.ClassLoader.loadLibrary1(ClassLoader.java:1931) >> at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1890) >> at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1851) >> at java.lang.Runtime.load0(Runtime.java:795) >> at java.lang.System.load(System.java:1062) >> at com.mapr.fs.shim.LibraryLoader.load(LibraryLoader.java:29) >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> at java.lang.reflect.Method.invoke(Method.java:606) >> at com.mapr.fs.ShimLoader.loadNativeLibrary(ShimLoader.java:323) >> at com.mapr.fs.ShimLoader.load(ShimLoader.java:198) >> at >> org.apache.hadoop.conf.CoreDefaultProperties.<clinit>(CoreDefaultProperties.java:59) >> at java.lang.Class.forName0(Native Method) >> at java.lang.Class.forName(Class.java:274) >> at >> org.apache.hadoop.conf.Configuration.getClassByNameOrNull(Configuration.java:1857) >> at >> org.apache.hadoop.conf.Configuration.getProperties(Configuration.java:2072) >> at >> org.apache.hadoop.conf.Configuration.loadResource(Configuration.java:2282) >> at >> org.apache.hadoop.conf.Configuration.loadResources(Configuration.java:2234) >> at org.apache.hadoop.conf.Configuration.getProps(Configuration.java:2151) >> at org.apache.hadoop.conf.Configuration.set(Configuration.java:1002) >> at org.apache.hadoop.conf.Configuration.set(Configuration.java:974) >> at org.apache.hadoop.mapred.JobConf.setJar(JobConf.java:518) >> at org.apache.hadoop.mapred.JobConf.setJarByClass(JobConf.java:536) >> at org.apache.hadoop.mapred.JobConf.<init>(JobConf.java:430) >> at org.apache.hadoop.hive.conf.HiveConf.initialize(HiveConf.java:1366) >> at org.apache.hadoop.hive.conf.HiveConf.<init>(HiveConf.java:1332) >> at >> org.apache.spark.sql.hive.client.ClientWrapper.<init>(ClientWrapper.scala:99) >> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) >> at >> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) >> at >> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) >> at java.lang.reflect.Constructor.newInstance(Constructor.java:526) >> at >> org.apache.spark.sql.hive.client.IsolatedClientLoader.liftedTree1$1(IsolatedClientLoader.scala:170) >> at >> org.apache.spark.sql.hive.client.IsolatedClientLoader.<init>(IsolatedClientLoader.scala:166) >> at >> org.apache.spark.sql.hive.HiveContext.metadataHive$lzycompute(HiveContext.scala:212) >> at >> org.apache.spark.sql.hive.HiveContext.metadataHive(HiveContext.scala:175) >> at >> org.apache.spark.sql.hive.HiveContext$$anon$2.<init>(HiveContext.scala:370) >> at >> org.apache.spark.sql.hive.HiveContext.catalog$lzycompute(HiveContext.scala:370) >> at org.apache.spark.sql.hive.HiveContext.catalog(HiveContext.scala:369) >> at >> org.apache.spark.sql.hive.HiveContext$$anon$1.<init>(HiveContext.scala:382) >> at >> org.apache.spark.sql.hive.HiveContext.analyzer$lzycompute(HiveContext.scala:382) >> at org.apache.spark.sql.hive.HiveContext.analyzer(HiveContext.scala:381) >> at >> org.apache.spark.sql.SQLContext$QueryExecution.assertAnalyzed(SQLContext.scala:901) >> at org.apache.spark.sql.DataFrame.<init>(DataFrame.scala:131) >> at org.apache.spark.sql.DataFrame$.apply(DataFrame.scala:51) >> at org.apache.spark.sql.SQLContext.sql(SQLContext.scala:725) >> at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:21) >> at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:26) >> at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:28) >> at $iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:30) >> at $iwC$$iwC$$iwC$$iwC.<init>(<console>:32) >> at $iwC$$iwC$$iwC.<init>(<console>:34) >> at $iwC$$iwC.<init>(<console>:36) >> at $iwC.<init>(<console>:38) >> at <init>(<console>:40) >> at .<init>(<console>:44) >> at .<clinit>(<console>) >> at .<init>(<console>:7) >> at .<clinit>(<console>) >> at $print(<console>) >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> at java.lang.reflect.Method.invoke(Method.java:606) >> at >> org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065) >> at >> org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1338) >> at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840) >> at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871) >> at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819) >> at >> org.apache.spark.repl.SparkILoop.reallyInterpret$1(SparkILoop.scala:857) >> at >> org.apache.spark.repl.SparkILoop.interpretStartingWith(SparkILoop.scala:902) >> at org.apache.spark.repl.SparkILoop.command(SparkILoop.scala:814) >> at org.apache.spark.repl.SparkILoop.processLine$1(SparkILoop.scala:657) >> at org.apache.spark.repl.SparkILoop.innerLoop$1(SparkILoop.scala:665) >> at org.apache.spark.repl.SparkILoop.org >> $apache$spark$repl$SparkILoop$$loop(SparkILoop.scala:670) >> at >> org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply$mcZ$sp(SparkILoop.scala:997) >> at >> org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945) >> at >> org.apache.spark.repl.SparkILoop$$anonfun$org$apache$spark$repl$SparkILoop$$process$1.apply(SparkILoop.scala:945) >> at >> scala.tools.nsc.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:135) >> at org.apache.spark.repl.SparkILoop.org >> $apache$spark$repl$SparkILoop$$process(SparkILoop.scala:945) >> at org.apache.spark.repl.SparkILoop.process(SparkILoop.scala:1059) >> at org.apache.spark.repl.Main$.main(Main.scala:31) >> at org.apache.spark.repl.Main.main(Main.scala) >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> at java.lang.reflect.Method.invoke(Method.java:606) >> at >> org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:664) >> at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:169) >> at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:192) >> at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:111) >> at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala) >> >> Any ideas what is causing this? >> >> Cheers, >> ~N >> > >
