Thanks Ofir and Sean,
I'm aware of AMPLab's ADAM. Spark is bringing down the cost of genome
analysis to consumer level. The potential for the future of medicine is
exciting indeed.
I normally do Scala consulting which keeps me too busy, but recently I
finally got some spare time to look into interesting open-source
projects like this.
James
On 24/07/16 09:09, Sean Owen wrote:
Also also, you may be interested in GATK, built on Spark, for genomics:
https://github.com/broadinstitute/gatk
On Sun, Jul 24, 2016 at 7:56 AM, Ofir Manor <ofir.ma...@equalum.io> wrote:
Hi James,
BTW - if you are into analyzing DNA with Spark, you may also be interested
in ADAM:
https://github.com/bigdatagenomics/adam
http://bdgenomics.org/
Ofir Manor
Co-Founder & CTO | Equalum
Mobile: +972-54-7801286 | Email: ofir.ma...@equalum.io
On Fri, Jul 22, 2016 at 10:31 PM, James McCabe <ja...@oranda.com> wrote:
Hi!
I hope this may be of use/interest to someone:
Spark, a Worked Example: Speeding Up DNA Sequencing
http://scala-bility.blogspot.nl/2016/07/spark-worked-example-speeding-up-dna.html
James
---------------------------------------------------------------------
To unsubscribe e-mail: user-unsubscr...@spark.apache.org
---------------------------------------------------------------------
To unsubscribe e-mail: user-unsubscr...@spark.apache.org
