Try setting the values in $SPARK_HOME/conf/spark-defaults.conf 

i.e. 

$ egrep 'spark.(driver|executor).extra' 
/data/orchard/spark-2.0.1/conf/spark-defaults.conf
spark.executor.extraJavaOptions         -Duser.timezone=UTC 
-Xloggc:garbage-collector.log
spark.driver.extraJavaOptions           -Duser.timezone=UTC 
-Xloggc:garbage-collector.log

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> On Oct 6, 2016, at 12:20 PM, vonnagy <i...@vadio.com> wrote:
> 
> I am trying to submit a job to spark running in a Mesos cluster. We need to
> pass custom java options to the driver and executor for configuration, but
> the driver task never includes the options. Here is an example submit. 
> 
> GC_OPTS="-XX:+UseConcMarkSweepGC 
>         -verbose:gc -XX:+PrintGCTimeStamps -Xloggc:$appdir/gc.out 
>         -XX:MaxPermSize=512m 
>         -XX:+CMSClassUnloadingEnabled " 
> 
> EXEC_PARAMS="-Dloglevel=DEBUG -Dkafka.broker-address=${KAFKA_ADDRESS}
> -Dredis.master=${REDIS_MASTER} -Dredis.port=${REDIS_PORT} 
> 
> spark-submit \ 
>  --name client-events-intake \ 
>  --class ClientEventsApp \ 
>  --deploy-mode cluster \ 
>  --driver-java-options "${EXEC_PARAMS} ${GC_OPTS}" \ 
>  --conf "spark.ui.killEnabled=true" \ 
>  --conf "spark.mesos.coarse=true" \ 
>  --conf "spark.driver.extraJavaOptions=${EXEC_PARAMS}" \ 
>  --conf "spark.executor.extraJavaOptions=${EXEC_PARAMS}" \ 
>  --master mesos://someip:7077 \ 
>  --verbose \ 
>  some.jar 
> 
> When the driver task runs in Mesos it is creating the following command: 
> 
> sh -c 'cd spark-1*;  bin/spark-submit --name client-events-intake --class
> ClientEventsApp --master mesos://someip:5050 --driver-cores 1.0
> --driver-memory 512M ../some.jar ' 
> 
> There are no options for the driver here, thus the driver app blows up
> because it can't find the java options. However, the environment variables
> contain the executor options: 
> 
> SPARK_EXECUTOR_OPTS -> -Dspark.executor.extraJavaOptions=-Dloglevel=DEBUG
> ... 
> 
> Any help would be great. I know that we can set some "spark.*" settings in
> default configs, but these are not necessarily spark related. This is not an
> issue when running the same logic outside of a Mesos cluster in Spark
> standalone mode. 
> 
> Thanks! 
> 
> 
> 
> --
> View this message in context: 
> http://apache-spark-user-list.1001560.n3.nabble.com/Submit-job-with-driver-options-in-Mesos-Cluster-mode-tp27853.html
> Sent from the Apache Spark User List mailing list archive at Nabble.com.
> 
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