Hi there, I am trying to run the example LDA code (http://spark.apache.org/docs/latest/mllib-clustering.html#latent-dirichlet-allocation-lda) on Spark 2.0.0/EMR 5.0.0
If run it with checkpoints enabled (sc.setCheckpointDir("s3n://s3-path/") ldaModel = LDA.train(corpus, k=3, maxIterations=200, checkpointInterval=10) I get the following error (sorry, quite long): Py4JJavaErrorTraceback (most recent call last) <ipython-input-10-64711b08964e> in <module>() ----> 1 ldaModel = LDA.train(corpus, k=3, maxIterations=200, checkpointInterval=10) /usr/lib/spark/python/pyspark/mllib/clustering.py in train(cls, rdd, k, maxIterations, docConcentration, topicConcentration, seed, checkpointInterval, optimizer) 1037 model = callMLlibFunc("trainLDAModel", rdd, k, maxIterations, 1038 docConcentration, topicConcentration, seed, -> 1039 checkpointInterval, optimizer) 1040 return LDAModel(model) 1041 /usr/lib/spark/python/pyspark/mllib/common.py in callMLlibFunc(name, *args) 128 sc = SparkContext.getOrCreate() 129 api = getattr(sc._jvm.PythonMLLibAPI(), name) --> 130 return callJavaFunc(sc, api, *args) 131 132 /usr/lib/spark/python/pyspark/mllib/common.py in callJavaFunc(sc, func, *args) 121 """ Call Java Function """ 122 args = [_py2java(sc, a) for a in args] --> 123 return _java2py(sc, func(*args)) 124 125 /usr/lib/spark/python/lib/py4j-0.10.1-src.zip/py4j/java_gateway.py in __call__(self, *args) 931 answer = self.gateway_client.send_command(command) 932 return_value = get_return_value( --> 933 answer, self.gateway_client, self.target_id, self.name) 934 935 for temp_arg in temp_args: /usr/lib/spark/python/pyspark/sql/utils.py in deco(*a, **kw) 61 def deco(*a, **kw): 62 try: ---> 63 return f(*a, **kw) 64 except py4j.protocol.Py4JJavaError as e: 65 s = e.java_exception.toString() /usr/lib/spark/python/lib/py4j-0.10.1-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name) 310 raise Py4JJavaError( 311 "An error occurred while calling {0}{1}{2}.\n". --> 312 format(target_id, ".", name), value) 313 else: 314 raise Py4JError( Py4JJavaError: An error occurred while calling o115.trainLDAModel. : org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 458.0 failed 4 times, most recent failure: Lost task 1.3 in stage 458.0 (TID 14827, ip-10-197-192-2.eu-west-1.compute.internal): java.lang.ClassCastException: scala.Tuple2 cannot be cast to org.apache.spark.graphx.Edge at org.apache.spark.graphx.EdgeRDD$$anonfun$1$$anonfun$apply$1.apply(EdgeRDD.scala:107) at scala.collection.Iterator$class.foreach(Iterator.scala:893) at org.apache.spark.InterruptibleIterator.foreach(InterruptibleIterator.scala:28) at org.apache.spark.graphx.EdgeRDD$$anonfun$1.apply(EdgeRDD.scala:107) at org.apache.spark.graphx.EdgeRDD$$anonfun$1.apply(EdgeRDD.scala:105) at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsWithIndex$1$$anonfun$apply$25.apply(RDD.scala:801) at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsWithIndex$1$$anonfun$apply$25.apply(RDD.scala:801) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319) at org.apache.spark.rdd.RDD.iterator(RDD.scala:283) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319) at org.apache.spark.rdd.RDD$$anonfun$8.apply(RDD.scala:332) at org.apache.spark.rdd.RDD$$anonfun$8.apply(RDD.scala:330) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:919) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:910) at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:866) at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:910) at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:668) at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:330) at org.apache.spark.rdd.RDD.iterator(RDD.scala:281) at org.apache.spark.graphx.EdgeRDD.compute(EdgeRDD.scala:50) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319) at org.apache.spark.rdd.RDD.iterator(RDD.scala:283) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319) at org.apache.spark.rdd.RDD.iterator(RDD.scala:283) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319) at org.apache.spark.rdd.RDD.iterator(RDD.scala:283) at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:79) at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:47) at org.apache.spark.scheduler.Task.run(Task.scala:85) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Driver stacktrace: at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1450) at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1438) at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1437) at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59) at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48) at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1437) at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:811) at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:811) at scala.Option.foreach(Option.scala:257) at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:811) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1659) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1618) at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1607) at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48) at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:632) at org.apache.spark.SparkContext.runJob(SparkContext.scala:1871) at org.apache.spark.SparkContext.runJob(SparkContext.scala:1934) at org.apache.spark.rdd.RDD$$anonfun$fold$1.apply(RDD.scala:1046) at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:151) at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:112) at org.apache.spark.rdd.RDD.withScope(RDD.scala:358) at org.apache.spark.rdd.RDD.fold(RDD.scala:1040) at org.apache.spark.mllib.clustering.EMLDAOptimizer.computeGlobalTopicTotals(LDAOptimizer.scala:226) at org.apache.spark.mllib.clustering.EMLDAOptimizer.next(LDAOptimizer.scala:213) at org.apache.spark.mllib.clustering.EMLDAOptimizer.next(LDAOptimizer.scala:79) at org.apache.spark.mllib.clustering.LDA.run(LDA.scala:299) at org.apache.spark.mllib.api.python.PythonMLLibAPI.trainLDAModel(PythonMLLibAPI.scala:552) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:237) at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357) at py4j.Gateway.invoke(Gateway.java:280) at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:128) at py4j.commands.CallCommand.execute(CallCommand.java:79) at py4j.GatewayConnection.run(GatewayConnection.java:211) at java.lang.Thread.run(Thread.java:745) Caused by: java.lang.ClassCastException: scala.Tuple2 cannot be cast to org.apache.spark.graphx.Edge at org.apache.spark.graphx.EdgeRDD$$anonfun$1$$anonfun$apply$1.apply(EdgeRDD.scala:107) at scala.collection.Iterator$class.foreach(Iterator.scala:893) at org.apache.spark.InterruptibleIterator.foreach(InterruptibleIterator.scala:28) at org.apache.spark.graphx.EdgeRDD$$anonfun$1.apply(EdgeRDD.scala:107) at org.apache.spark.graphx.EdgeRDD$$anonfun$1.apply(EdgeRDD.scala:105) at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsWithIndex$1$$anonfun$apply$25.apply(RDD.scala:801) at org.apache.spark.rdd.RDD$$anonfun$mapPartitionsWithIndex$1$$anonfun$apply$25.apply(RDD.scala:801) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319) at org.apache.spark.rdd.RDD.iterator(RDD.scala:283) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319) at org.apache.spark.rdd.RDD$$anonfun$8.apply(RDD.scala:332) at org.apache.spark.rdd.RDD$$anonfun$8.apply(RDD.scala:330) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:919) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:910) at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:866) at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:910) at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:668) at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:330) at org.apache.spark.rdd.RDD.iterator(RDD.scala:281) at org.apache.spark.graphx.EdgeRDD.compute(EdgeRDD.scala:50) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319) at org.apache.spark.rdd.RDD.iterator(RDD.scala:283) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319) at org.apache.spark.rdd.RDD.iterator(RDD.scala:283) at org.apache.spark.rdd.MapPartitionsRDD.compute(MapPartitionsRDD.scala:38) at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:319) at org.apache.spark.rdd.RDD.iterator(RDD.scala:283) at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:79) at org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:47) at org.apache.spark.scheduler.Task.run(Task.scala:85) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:274) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) ... 1 more -- View this message in context: http://apache-spark-user-list.1001560.n3.nabble.com/example-LDA-code-ClassCastException-tp28009.html Sent from the Apache Spark User List mailing list archive at Nabble.com. 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