The org.bdgenomics.adam is one of the Components of the GATK, and I just
download the release version from its github website . However, when I build
a new docker image with spark2.4.5 and scala 2.12.4,It works well and that
makes me confused.
root@master2:~# pyspark
Python 2.7.17 (default, Apr 15 2020, 17:20:14)
[GCC 7.5.0] on linux2
Type "help", "copyright", "credits" or "license" for more information.
20/06/08 01:44:16 WARN NativeCodeLoader: Unable to load native-hadoop
library for your platform... using builtin-java classes where applicable
Using Spark's default log4j profile:
org/apache/spark/log4j-defaults.properties
Setting default log level to "WARN".
To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use
setLogLevel(newLevel).
Welcome to
____ __
/ __/__ ___ _____/ /__
_\ \/ _ \/ _ `/ __/ '_/
/__ / .__/\_,_/_/ /_/\_\ version 2.4.5
/_/
Using Python version 2.7.17 (default, Apr 15 2020 17:20:14)
SparkSession available as 'spark'.
root@master2:~# scala -version
Scala code runner version 2.12.4 -- Copyright 2002-2017, LAMP/EPFL and
Lightbend, Inc.
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