Thank you for that Herve! I managed to figure out what the problem was.
I was using a GRangesList constructor and, when validating the argument passed to the function, I was checking if the class was GRangesList instead of CompressedGRangesList. Radu On Fri, Apr 27, 2018 at 8:11 PM, Hervé Pagès <hpa...@fredhutch.org> wrote: > Hi Radu, > > DMRcaller is all green on today's report: > > https://bioconductor.org/checkResults/3.7/bioc-LATEST/DMRcaller/ > > Remember that after you update (and push to git.bioconductor.org) you > need to wait at least 18h before the update is visible on the build > report. 18h is if you pushed right before the builds start (the software > builds start every day at 4:45 pm EST). If you push right after the > builds start then you will need to wait 42h! > > Cheers, > H. > > On 04/20/2018 07:47 AM, Radu Zabet wrote: > >> Hi everyone, >> >> I am the maintainer of DMRcaller. I did an update yesterday and on the >> build report today, the package failed with the error. >> >> Error: processing vignette 'DMRcaller.Rnw' failed with diagnostics: >> methylationProfile needs to be a GRangesList >> Execution halted >> >> >> On my machine (MacOS with R 3.4.4) it works >> >> * creating vignettes ... OK >> >> Any suggestion of why this might happen? Is there something I am missing? >> >> Radu >> >> >> > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Canc > <https://maps.google.com/?q=Fred+Hutchinson+Canc&entry=gmail&source=g>er > Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > -- Best regards, Dr Nicolae Radu Zabet Lecturer in Computational Biology, School of Biological Sciences, University of Essex, Colchester, CO4 3SQ, United Kingdom T: +44(0)1206872630 E: nza...@essex.ac.uk [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel