Dario, Please download the modified package in dev with version 1.7.2.
Sarah, I also added option geneEnd for FeatureLocForDistance in annotatePeakInBatch function. Best regards, Julie On 3/17/11 2:00 AM, "Dario Strbenac" <d.strbe...@garvan.org.au> wrote: > It has become standard for Bioconductor packages to use * to represent either > strand. When I try to use annotatePeakInBatch with RangedData that has * in > it, it fails. Could this be repaired ? > > Minimal example : > > library(ChIPpeakAnno) > > peaksGR <- GRanges("chr1", IRanges(seq(100, 300, 100), width = 20)) > genesGR <- GRanges("chr1", IRanges(200, 500), '+') > > peaksRD <- as(peaksGR, "RangedData") > genesRD <- as(genesGR, "RangedData") > > annotatePeakInBatch(peaksRD, AnnotationData = genesRD) > > -------------------------------------- > Dario Strbenac > Research Assistant > Cancer Epigenetics > Garvan Institute of Medical Research > Darlinghurst NSW 2010 > Australia > > _______________________________________________ > Bioc-sig-sequencing mailing list > Bioc-sig-sequencing@r-project.org > https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing > _______________________________________________ Bioc-sig-sequencing mailing list Bioc-sig-sequencing@r-project.org https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing