Hello everyone,
When loading reads with ShortRead::readAligned(), one has the great
convenience of filtering the input.
If I intend to load only unique sequences that are unaligned ("NM"),
can I use occurenceFilter?
By _unique_ I mean that if the sequence ATCTCATAGTGGG has been loaded
once, I do not want to load it the next time it is found.
?srFilter clearly documents how aligned reads are occurenceFilter-ed,
however, unaligned reads are not mentioned.
Thank you,
Ivan
Ivan Gregoretti, PhD
National Institute of Diabetes and Digestive and Kidney Diseases
National Institutes of Health
5 Memorial Dr, Building 5, Room 205.
Bethesda, MD 20892. USA.
Phone: 1-301-496-1016 and 1-301-496-1592
Fax: 1-301-496-9878
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