Dear Bruno,
As Davis replied to you on the Bioconductor mailing list, the glm
functions in edgeR perform differential expression analysis of arbitrarily
complicated RNA-Seq experiments. There is a case study in the edgeR
User's guide.
Best wishes
Gordon
---------------------------------------------
Professor Gordon K Smyth,
Bioinformatics Division,
Walter and Eliza Hall Institute of Medical Research,
1G Royal Parade, Parkville, Vic 3052, Australia.
Tel: (03) 9345 2326, Fax (03) 9347 0852,
sm...@wehi.edu.au
http://www.wehi.edu.au
http://www.statsci.org/smyth
Date: Mon, 4 Jul 2011 15:48:42 +0200
From: Bruno Zeitouni <bruno.zeito...@curie.fr>
To: <bioc-sig-sequencing@r-project.org>
Subject: [Bioc-sig-seq] R package for DGE analysis between multiple
RNA-Seq samples
Dear all,
Have you already known about a RNA-seq R Package for the differential
expression analysis between multiple samples (ANOVA-like) ?
Tools such as edgeR or DESeq seems to be limited to the analysis between
two conditions only.
thanks
Bruno
--
Bruno Zeitouni, PhD
Institut Curie - U900 INSERM - Mines ParisTech
Equipe Bioinformatique
B?timent de Biologie du D?veloppement
26 rue d'ULM
75248 Paris Cedex 05 - FRANCE
T?l : +33 1 56 24 69 31
Mail : bruno.zeito...@curie.fr
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