Hello, As you advise me, I installed R version 2.14 but I can't use the DEXSeq library: package "DEXSeq is not available (for R Under development)"... Do you know why? Thanks, Jane
>R.2.14 R Under development (unstable) (2011-07-24 r56492) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-unknown-linux-gnu (64-bit) R est un logiciel libre livré sans AUCUNE GARANTIE. Vous pouvez le redistribuer sous certaines conditions. Tapez 'license()' ou 'licence()' pour plus de détails. R est un projet collaboratif avec de nombreux contributeurs. Tapez 'contributors()' pour plus d'information et 'citation()' pour la façon de le citer dans les publications. Tapez 'demo()' pour des démonstrations, 'help()' pour l'aide en ligne ou 'help.start()' pour obtenir l'aide au format HTML. Tapez 'q()' pour quitter R. > install.packages("DEXSeq") --- SVP sélectionner un miroir CRAN pour cette session --- CRAN mirror 1: Argentina (La Plata) 2: Argentina (Mendoza) 3: Australia (Canberra) 4: Australia (Melbourne) 5: Austria 6: Belgium 7: Brazil (PR) 8: Brazil (RJ) 9: Brazil (SP 1) 10: Brazil (SP 2) 11: Canada (BC) 12: Canada (NS) 13: Canada (ON) 14: Canada (QC 1) 15: Canada (QC 2) 16: Chile 17: China (Beijing 1) 18: China (Beijing 2) 19: China (Hefei) 20: China (Hong Kong) 21: China (Xiamen) 22: Colombia (Bogota) 23: Colombia (Cali) 24: Denmark 25: France (Toulouse) 26: France (Lyon 1) 27: France (Lyon 2) 28: Germany (Berlin) 29: Germany (Goettingen) 30: Germany (Muenchen) 31: Germany (Wiesbaden) 32: Greece 33: Indonesia 34: Iran 35: Ireland 36: Italy (Milano) 37: Italy (Padua) 38: Italy (Palermo) 39: Japan (Hyogo) 40: Japan (Tsukuba) 41: Korea 42: Mexico (Mexico City) 43: Mexico (Texcoco) 44: Netherlands (Amsterdam) 45: Netherlands (Utrecht) 46: New Zealand 47: Norway 48: Philippines 49: Poland (Gdansk) 50: Poland (Oswiecim) 51: Poland (Wroclaw) 52: Russia 53: Singapore 54: Slovakia 1 55: Slovakia 2 56: South Africa 57: Spain (Madrid) 58: Sweden 59: Switzerland 60: Taiwan (Taichung) 61: Taiwan (Taipei 1) 62: Taiwan (Taipei 2) 63: Thailand 64: UK (Bristol) 65: UK (London) 66: UK (St Andrews) 67: USA (AZ) 68: USA (CA 1) 69: USA (CA 2) 70: USA (IA) 71: USA (MA) 72: USA (MI) 73: USA (MO) 74: USA (OH) 75: USA (OR) 76: USA (PA 1) 77: USA (PA 2) 78: USA (TX 1) 79: USA (TX 2) 80: USA (WA 1) 81: USA (WA 2) Sélection : 26 Message d'avis : In getDependencies(pkgs, dependencies, available, lib) : package DEXSeq is not available (for R Under development) > 2011/7/24 Martin Morgan <mtmor...@fhcrc.org> > On 07/22/2011 07:40 AM, Jane Merlevede wrote: > >> Hello, >> >> I have used DESeq for gene differential expression analysis and I would >> like >> to use DEXSeq now for exon differential expression analysis. >> The point is that the library DEXSeq seems to be available only in R >> version >> 2.14.0 (unstable). I am working on Linux (CentOS), with R version 2.13.0. >> I >> have not found this R version 2.14.0 for Linux... Finally, I cannot use >> DEXSeq. >> I would like to know if DEXSeq will be soon available in R version 2.13.0. >> Or is the only solution to work with Windows? >> > > As Sean mentions, this requires R-devel. It is not that difficult to build > R from source on Linux, see sections 1 and 2 of > > > http://cran.fhcrc.org/doc/**manuals/R-admin.html<http://cran.fhcrc.org/doc/manuals/R-admin.html> > > The source code is available here > > http://cran.fhcrc.org/sources.**html <http://cran.fhcrc.org/sources.html> > > you are looking for R-devel.tar.gz > > Martin > > >> Thank you for your help, >> Jane Merlevède >> >> [[alternative HTML version deleted]] >> >> >> >> >> ______________________________**_________________ >> Bioc-sig-sequencing mailing list >> Bioc-sig-sequencing@r-project.**org <Bioc-sig-sequencing@r-project.org> >> https://stat.ethz.ch/mailman/**listinfo/bioc-sig-sequencing<https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing> >> > > > -- > Computational Biology > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 > > Location: M1-B861 > Telephone: 206 667-2793 > [[alternative HTML version deleted]]
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