hi every one:
i am still confused by parameters in function trimLRPatterns
if i set
Lpattern <- "AAAAAAAATTCTGCT"
Rpattern <- "GATCGGATTTTTTTT"
subject <- DNAString("TTCTGCTTGACGTGATCGGA")
trimLRPatterns(Lpattern = Lpattern, subject = subject)#
the results are
13-letter "DNAString" instance
seq: TGACGTGATCGGA
trimLRPatterns(Rpattern = Rpattern, subject = subject)#
the results are
13-letter "DNAString" instance
seq: TTCTGCTTGACGT
i think with.Rindels = F with.Lindels = F
AAAAAAAA and TTTTTTTT are insertions
thank you
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