hello every one, i have such coding
> subject1 = "ATCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAATATT" > pattern1 = "AATCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGTCTTCTGCTTG" > matchPattern(pattern1, subject1, max.mismatch=0.2, min.mismatch=0, with.indels=TRUE) Views on a 81-letter BString subject subject: ATCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAATATT views: NONE > trimLRPatterns(Lpattern = pattern1, subject = subject, max.Lmismatch=0,with.Lindels=TRUE) [1] "AAAAAAAAAAAATATT" > i already allow the indels,but why matchPattern cannot find the pattern in subject what does with.indels mean? i am confused thx shan gao [[alternative HTML version deleted]] _______________________________________________ Bioc-sig-sequencing mailing list Bioc-sig-sequencing@r-project.org https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing