Re: [ccp4bb]: PDB to 1 letter code

[Sheena McGowan]

Hi Coot can do it as well Just use scripting and type 'print-sequence imol'  (imol = the molecule number that coot has assigned) Cheers Sheena On 04/10/2006, at 6:00 AM, Bottomley, Matthew wrote: ***  For details on how to be removed from this list visit the  *** ***          CCP4 home page http://www.ccp4.ac.uk         *** Hello, could anyone tell me how to get the single-letter amino acid sequence out of a PDB file, e.g. in fasta format? I would like to do this so that I can compare it with the 'expected' sequence, since e.g. arp/warp sometimes puts an Ala when there is a Lys with poor side-chain density.... Thanks. Matt ------------------------------------------------------------------------------ Notice:  This e-mail message, together with any attachments, contains information of Merck & Co., Inc. (One Merck Drive, Whitehouse Station, New Jersey, USA 08889), and/or its affiliates (which may be known outside the United States as Merck Frosst, Merck Sharp & Dohme or MSD and in Japan, as Banyu - direct contact information for affiliates is  available at http://www.merck.com/contact/contacts.html) that may be  confidential, proprietary copyrighted and/or legally privileged. It is  intended solely for the use of the individual or entity named on this  message. If you are not the intended recipient, and have received this  message in error, please notify us immediately by reply e-mail and then  delete it from your system. ------------------------------------------------------------------------------ Dr Sheena McGowan Research Fellow Department of Biochemistry and Molecular Biology School of Biomedical Sciences, Faculty of Medicine Monash University, Clayton Victoria, AUSTRALIA 3800 Tel:  (613) 9905 3781 (office) Tel:  (613) 9905 1653 (lab) Fax: (613) 9905 3726 Email:  [EMAIL PROTECTED]