Hi Maher, I posted a question earlier on the bulletin regarding > how to calculate the map correlation coefficient using Overlapamp *or > * > *any other program*? My follow up question is, does anybody know how to > calculate the map correlation coefficient for the main chain and side > chain separately?
depending on resolution, the command phenix.model_vs_data data.mtz model.pdb comprehensive=true reports map CC either per atom or per residue. If it reports map CC per atom, then knowing which atoms belong to main/side chains you can extract the information you need. However, if the resolution of your data is "low enough" so it outputs map CC computed per residue - then this doesn't answer your question. Good luck! Pavel.
