Blob is gone--something funny happened, I guess. I went back to using the original mtz from scala, removed and replaced a bunch of waters, and no more worm! I can't really figure it out, and wish I knew exactly what happened, but I think I am just going to non-chalantly move along.
Jacob On Thu, Oct 27, 2011 at 8:41 PM, Yuri Pompeu <yuri.pom...@ufl.edu> wrote: > Jacob, > By simply looking at the figures you show, it does look like you have some > type of long, maybe polymeric, molecule bound. > With that being said: > 1- It is in the symmetry axis so maybe be a little noisy there > 2-If you are in doubt about it being real or not check the density and how it > fits into your protein and (symm. related neighbours of course). If the > desity appears to be in position for some real interactions- i.e, there are > some peaks at H-bond distances of polar groups etc...- it may be real. If its > all random and through your protein atoms, probably not > Keep in mind alternate conformers.... > HTH > > -- ******************************************* Jacob Pearson Keller Northwestern University Medical Scientist Training Program email: j-kell...@northwestern.edu *******************************************
