On 20/04/2018 16:57, F.Xavier Gomis-Rüth wrote:
Thanks a lot, Jon. The resolution is very low (3.1Å) and the density is confusing, I was trying to rule out things.

FWIW, 3.1Å is not very low for modelling N-linked glycans these days.


I am not an expert in glycoproteins, if a boat GlcNAc is this extremely 
unlikely, I will try other things...😉.

Allow me to suggest that one of those things be

Extensions -> Modelling -> Modules -> Carbohydrate -> Glyco -> N-Linked Glycan 
Addition...

(if you use Coot, that is).

Paul

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