This bug was fixed in the package compiz - 1:0.8.4-0ubuntu15.3

---------------
compiz (1:0.8.4-0ubuntu15.3) lucid-proposed; urgency=low

  * Upstream patch, 438868_Dont-grant-override_redirect-windows-focus,
    from 0.8.8 branch; (LP: #438868)
 -- K Vishnoo Charan Reddy <v...@ubuntu.com>   Sat, 02 Apr 2011 21:34:58 +0530

** Changed in: compiz (Ubuntu Lucid)
       Status: Fix Committed => Fix Released

** Changed in: compiz (Ubuntu Maverick)
       Status: Fix Committed => Fix Released

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https://bugs.launchpad.net/bugs/438868

Title:
  Numerous applications have focus issues after emerging from a
  screensaver or suspend

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