Le 23/08/10 18:58, Joseph P. Noel a écrit : > Hi All. > > I am running the latest release of COOT on my Mac running 10.6.4 from X11 > quartz installed using Bill Scott's fink instructions. It runs fine. I have > just begun using scripts generated by Molprobity or just looking through my > models to make corrections based upon the drawing of probe dots. That all > works fine as well. However, I have found that COOT and X11 freezes after > several corrections of sites (on average I would say about 10-15 > corrections). Everything freezes - screen and X11. I have to then force quite > X11 to regain control of things and start fresh. I began by just using the > COOT backups or saving a new set of corrected coordinates after each fix but > obviously this will take quite some time to thoroughly improve a large model. > I am including the recommended .coot file I found on the Molprobity site. If > anyone has any suggestions on how to eliminate these freezes I would be > eternally grateful! > > > (define *probe-command* > "/Users/sandiegonoels/Sites/molprobity3/bin/macosx/probe") > (define *reduce-command* > "/Users/sandiegonoels/Sites/molprobity3/bin/macosx/reduce") > (set-do-probe-dots-on-rotamers-and-chis 1) > (set-do-probe-dots-post-refine 1) > > > Cheers! > > Joe Noel >
Hi, We have experienced the same problem. But we haven't found a way to reproduce the freezes consistently... -- Miguel Architecture et Fonction des Macromolécules Biologiques (UMR6098) CNRS, Universités d'Aix-Marseille I & II Case 932, 163 Avenue de Luminy, 13288 Marseille cedex 9, France Tel: +33(0) 491 82 55 93 Fax: +33(0) 491 26 67 20 e-mail: miguel.ortiz-lombar...@afmb.univ-mrs.fr -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean.
