Package: src:libbio-db-refseq-perl Version: 1.7.4-1 Severity: serious Control: fixed -1 1.7.4-2 Tags: ftbfs bookworm
Dear maintainer: During a rebuild of all packages in bookworm, this package failed to build. [ Note: The bug is marked as fixed with the version in trixie/forky/sid, but packages in bookworm must still build in bookworm ]. [ Note: The package seems to build ok when using the unshare backend of sbuild, but this was not the default in bookworm yet ] Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/bookworm/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:libbio-db-refseq-perl, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::DB::RefSeq Writing MYMETA.yml and MYMETA.json dh_auto_build make -j2 make[1]: Entering directory '/<<PKGBUILDDIR>>' cp lib/Bio/DB/RefSeq.pm blib/lib/Bio/DB/RefSeq.pm Manifying 1 pod document make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_test make -j2 test TEST_VERBOSE=1 make[1]: Entering directory '/<<PKGBUILDDIR>>' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ........... 1..1 ok 1 - Bio/DB/RefSeq.pm loaded ok ok t/author-mojibake.t ...... skipped: these tests are for testing by the author t/author-pod-coverage.t .. skipped: these tests are for testing by the author t/author-pod-syntax.t .... skipped: these tests are for testing by the author ------------- EXCEPTION ------------- MSG: acc NM_006732 does not exist STACK Bio::DB::WebDBSeqI::get_Seq_by_acc /usr/share/perl5/Bio/DB/WebDBSeqI.pm:203 STACK toplevel t/RefSeq.t:21 ------------------------------------- # Tests were run but no plan was declared and done_testing() was not seen. # Looks like your test exited with 255 just after 1. t/RefSeq.t ............... ok 1 Dubious, test returned 255 (wstat 65280, 0xff00) All 1 subtests passed Test Summary Report ------------------- t/RefSeq.t (Wstat: 65280 (exited 255) Tests: 1 Failed: 0) Non-zero exit status: 255 Parse errors: No plan found in TAP output Files=5, Tests=2, 0 wallclock secs ( 0.01 usr 0.01 sys + 0.19 cusr 0.05 csys = 0.26 CPU) Result: FAIL Failed 1/5 test programs. 0/2 subtests failed. make[1]: *** [Makefile:854: test_dynamic] Error 255 make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_test: error: make -j2 test TEST_VERBOSE=1 returned exit code 2 make: *** [debian/rules:4: build] Error 25 dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2 --------------------------------------------------------------------------------
