I: using fakeroot in build.
I: Current time: Sat Sep 17 17:34:22 CEST 2011
I: pbuilder-time-stamp: 1316273662
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/base.tgz]
I: creating local configuration
I: copying local configuration
I: mounting /proc filesystem
I: mounting /dev/pts filesystem
I: Mounting /var/cache/pbuilder/ccache
I: policy-rc.d already exists
I: Obtaining the cached apt archive contents
I: Setting up ccache
I: Installing the build-deps
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper (>= 7.0.50~), gem2deb (>= 0.2.4~), libxml-ruby1.8, libxml-ruby1.9.1, docbook-to-man, rdtool
dpkg-deb: building package `pbuilder-satisfydepends-dummy' in `/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously deselected package pbuilder-satisfydepends-dummy.
(Reading database ... 10827 files and directories currently installed.)
Unpacking pbuilder-satisfydepends-dummy (from .../pbuilder-satisfydepends-dummy.deb) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper (>= 7.0.50~); however:
  Package debhelper is not installed.
 pbuilder-satisfydepends-dummy depends on gem2deb (>= 0.2.4~); however:
  Package gem2deb is not installed.
 pbuilder-satisfydepends-dummy depends on libxml-ruby1.8; however:
  Package libxml-ruby1.8 is not installed.
 pbuilder-satisfydepends-dummy depends on libxml-ruby1.9.1; however:
  Package libxml-ruby1.9.1 is not installed.
 pbuilder-satisfydepends-dummy depends on docbook-to-man; however:
  Package docbook-to-man is not installed.
 pbuilder-satisfydepends-dummy depends on rdtool; however:
  Package rdtool is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
The following NEW packages will be installed:
  bsdmainutils{a} debhelper{a} devscripts{a} docbook{a} docbook-to-man{a} 
  file{a} gem2deb{a} gettext{a} gettext-base{a} groff-base{a} html2text{a} 
  intltool-debian{a} libcroco3{a} libexpat1{a} libffi5{a} libglib2.0-0{a} 
  libmagic1{a} libpcre3{a} libpipeline1{a} librd-ruby1.8{a} libreadline5{a} 
  libruby1.8{a} libruby1.9.1{a} libsp1c2{a} libssl1.0.0{a} libunistring0{a} 
  libxml-ruby1.8{a} libxml-ruby1.9.1{a} libxml2{a} libyaml-0-2{a} man-db{a} 
  mime-support{a} po-debconf{a} python{a} python-minimal{a} python2.6{a} 
  python2.6-minimal{a} rdtool{a} ruby1.8{a} ruby1.8-dev{a} ruby1.9.1{a} 
  ruby1.9.1-dev{a} rubygems{a} rubygems1.8{a} sgml-base{a} sgml-data{a} 
  sp{a} xml-core{a} 
0 packages upgraded, 48 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/29.4 MB of archives. After unpacking 95.5 MB will be used.
Writing extended state information...
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously deselected package libpipeline1.
(Reading database ... 10827 files and directories currently installed.)
Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_amd64.deb) ...
Selecting previously deselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ...
Selecting previously deselected package libffi5.
Unpacking libffi5 (from .../libffi5_3.0.10~rc10-1_amd64.deb) ...
Selecting previously deselected package libreadline5.
Unpacking libreadline5 (from .../libreadline5_5.2-10_amd64.deb) ...
Selecting previously deselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_amd64.deb) ...
Selecting previously deselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-6_amd64.deb) ...
Selecting previously deselected package libssl1.0.0.
Unpacking libssl1.0.0 (from .../libssl1.0.0_1.0.0d-3_amd64.deb) ...
Selecting previously deselected package man-db.
Unpacking man-db (from .../man-db_2.6.0.2-2_amd64.deb) ...
Selecting previously deselected package libmagic1.
Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_amd64.deb) ...
Selecting previously deselected package file.
Unpacking file (from .../file_5.04-5+b1_amd64.deb) ...
Selecting previously deselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-4_amd64.deb) ...
Selecting previously deselected package libxml2.
Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-4_amd64.deb) ...
Selecting previously deselected package mime-support.
Unpacking mime-support (from .../mime-support_3.51-1_all.deb) ...
Selecting previously deselected package python2.6-minimal.
Unpacking python2.6-minimal (from .../python2.6-minimal_2.6.7-4_amd64.deb) ...
Selecting previously deselected package libexpat1.
Unpacking libexpat1 (from .../libexpat1_2.0.1-7_amd64.deb) ...
Selecting previously deselected package python2.6.
Unpacking python2.6 (from .../python2.6_2.6.7-4_amd64.deb) ...
Selecting previously deselected package python-minimal.
Unpacking python-minimal (from .../python-minimal_2.6.7-3_all.deb) ...
Selecting previously deselected package python.
Unpacking python (from .../python_2.6.7-3_all.deb) ...
Selecting previously deselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
Selecting previously deselected package libglib2.0-0.
Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ...
Selecting previously deselected package libcroco3.
Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ...
Selecting previously deselected package libunistring0.
Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ...
Selecting previously deselected package gettext.
Unpacking gettext (from .../gettext_0.18.1.1-4_amd64.deb) ...
Selecting previously deselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
Selecting previously deselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
Selecting previously deselected package debhelper.
Unpacking debhelper (from .../debhelper_8.9.6_all.deb) ...
Selecting previously deselected package devscripts.
Unpacking devscripts (from .../devscripts_2.11.1_amd64.deb) ...
Selecting previously deselected package sgml-base.
Unpacking sgml-base (from .../sgml-base_1.26+nmu1_all.deb) ...
Selecting previously deselected package xml-core.
Unpacking xml-core (from .../archives/xml-core_0.13_all.deb) ...
Selecting previously deselected package sgml-data.
Unpacking sgml-data (from .../sgml-data_2.0.6_all.deb) ...
Selecting previously deselected package docbook.
Unpacking docbook (from .../archives/docbook_4.5-4_all.deb) ...
Selecting previously deselected package libsp1c2.
Unpacking libsp1c2 (from .../libsp1c2_1.3.4-1.2.1-47.1_amd64.deb) ...
Selecting previously deselected package sp.
Unpacking sp (from .../sp_1.3.4-1.2.1-47.1_amd64.deb) ...
Selecting previously deselected package docbook-to-man.
Unpacking docbook-to-man (from .../docbook-to-man_1%3a2.0.0-28_amd64.deb) ...
Selecting previously deselected package libruby1.8.
Unpacking libruby1.8 (from .../libruby1.8_1.8.7.352-2_amd64.deb) ...
Selecting previously deselected package ruby1.8.
Unpacking ruby1.8 (from .../ruby1.8_1.8.7.352-2_amd64.deb) ...
Selecting previously deselected package rubygems.
Unpacking rubygems (from .../rubygems_1.7.2-1_all.deb) ...
Selecting previously deselected package rubygems1.8.
Unpacking rubygems1.8 (from .../rubygems1.8_1.7.2-1_all.deb) ...
Selecting previously deselected package ruby1.8-dev.
Unpacking ruby1.8-dev (from .../ruby1.8-dev_1.8.7.352-2_amd64.deb) ...
Selecting previously deselected package libyaml-0-2.
Unpacking libyaml-0-2 (from .../libyaml-0-2_0.1.4-1_amd64.deb) ...
Selecting previously deselected package libruby1.9.1.
Unpacking libruby1.9.1 (from .../libruby1.9.1_1.9.2.290-2_amd64.deb) ...
Selecting previously deselected package ruby1.9.1.
Unpacking ruby1.9.1 (from .../ruby1.9.1_1.9.2.290-2_amd64.deb) ...
Selecting previously deselected package ruby1.9.1-dev.
Unpacking ruby1.9.1-dev (from .../ruby1.9.1-dev_1.9.2.290-2_amd64.deb) ...
Selecting previously deselected package gem2deb.
Unpacking gem2deb (from .../archives/gem2deb_0.2.7_all.deb) ...
Selecting previously deselected package librd-ruby1.8.
Unpacking librd-ruby1.8 (from .../librd-ruby1.8_0.6.22-1_all.deb) ...
Selecting previously deselected package libxml-ruby1.8.
Unpacking libxml-ruby1.8 (from .../libxml-ruby1.8_1.1.3-2_amd64.deb) ...
Selecting previously deselected package libxml-ruby1.9.1.
Unpacking libxml-ruby1.9.1 (from .../libxml-ruby1.9.1_1.1.3-2_amd64.deb) ...
Selecting previously deselected package rdtool.
Unpacking rdtool (from .../rdtool_0.6.22-1_all.deb) ...
Setting up libpipeline1 (1.2.0-3) ...
Setting up libpcre3 (8.12-4) ...
Setting up libffi5 (3.0.10~rc10-1) ...
Setting up libreadline5 (5.2-10) ...
Setting up bsdmainutils (8.2.3) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6) ...
Setting up libssl1.0.0 (1.0.0d-3) ...
Setting up man-db (2.6.0.2-2) ...
Building database of manual pages ...
Setting up libmagic1 (5.04-5+b1) ...
Setting up file (5.04-5+b1) ...
Setting up gettext-base (0.18.1.1-4) ...
Setting up libxml2 (2.7.8.dfsg-4) ...
Setting up mime-support (3.51-1) ...
update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode.
Setting up python2.6-minimal (2.6.7-4) ...
Setting up libexpat1 (2.0.1-7) ...
Setting up python2.6 (2.6.7-4) ...
Setting up python-minimal (2.6.7-3) ...
Setting up python (2.6.7-3) ...
Setting up html2text (1.3.2a-15) ...
Setting up libglib2.0-0 (2.28.6-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-4) ...
Setting up gettext (0.18.1.1-4) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
Setting up debhelper (8.9.6) ...
Setting up devscripts (2.11.1) ...
Setting up sgml-base (1.26+nmu1) ...
Setting up xml-core (0.13) ...
Setting up sgml-data (2.0.6) ...
Setting up docbook (4.5-4) ...
Setting up libsp1c2 (1.3.4-1.2.1-47.1) ...
Setting up sp (1.3.4-1.2.1-47.1) ...
Setting up docbook-to-man (1:2.0.0-28) ...
Setting up libruby1.8 (1.8.7.352-2) ...
Setting up ruby1.8 (1.8.7.352-2) ...
update-alternatives: using /usr/bin/ruby1.8 to provide /usr/bin/ruby (ruby) in auto mode.
Setting up rubygems (1.7.2-1) ...
Setting up rubygems1.8 (1.7.2-1) ...
Setting up ruby1.8-dev (1.8.7.352-2) ...
Setting up libyaml-0-2 (0.1.4-1) ...
Setting up libruby1.9.1 (1.9.2.290-2) ...
Setting up ruby1.9.1 (1.9.2.290-2) ...
Setting up ruby1.9.1-dev (1.9.2.290-2) ...
Setting up gem2deb (0.2.7) ...
Setting up librd-ruby1.8 (0.6.22-1) ...
Setting up libxml-ruby1.8 (1.1.3-2) ...
Setting up libxml-ruby1.9.1 (1.1.3-2) ...
Setting up rdtool (0.6.22-1) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  fakeroot
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/129 kB of archives.
After this operation, 467 kB of additional disk space will be used.
Selecting previously deselected package fakeroot.
(Reading database ... 15843 files and directories currently installed.)
Unpacking fakeroot (from .../fakeroot_1.18-1_amd64.deb) ...
Processing triggers for man-db ...
Setting up fakeroot (1.18-1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode.
I: Copying back the cached apt archive contents
I: Copying source file
I: copying [/tmp/ruby-bio.build/ruby-bio_1.4.1-2.dsc]
I: copying [/tmp/ruby-bio.build/ruby-bio_1.4.1.orig.tar.gz]
I: copying [/tmp/ruby-bio.build/ruby-bio_1.4.1-2.debian.tar.gz]
I: Extracting source
gpgv: keyblock resource `/tmp/buildd/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Fri Jul 29 13:58:53 2011 UTC using RSA key ID F4DFBE99
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./ruby-bio_1.4.1-2.dsc
dpkg-source: info: extracting ruby-bio in ruby-bio-1.4.1
dpkg-source: info: unpacking ruby-bio_1.4.1.orig.tar.gz
dpkg-source: info: unpacking ruby-bio_1.4.1-2.debian.tar.gz
dpkg-source: info: applying disable-test-soap.patch
I: Building the package
I: Running cd tmp/buildd/*/ && dpkg-buildpackage -us -uc  -rfakeroot
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): 
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): 
dpkg-buildpackage: source package ruby-bio
dpkg-buildpackage: source version 1.4.1-2
dpkg-buildpackage: source changed by Lucas Nussbaum <lucas@debian.org>
 dpkg-source --before-build ruby-bio-1.4.1
dpkg-buildpackage: host architecture amd64
 fakeroot debian/rules clean
dh clean --buildsystem=ruby --with ruby
   dh_testdir -O--buildsystem=ruby
   debian/rules override_dh_auto_clean
make[1]: Entering directory `/tmp/buildd/ruby-bio-1.4.1'
dh_auto_clean
  Entering dh_ruby --clean
  Leaving dh_ruby --clean
rm -f br_biofetch.1 br_bioflat.1 br_biogetseq.1 br_pmfetch.1
make[1]: Leaving directory `/tmp/buildd/ruby-bio-1.4.1'
   dh_clean -O--buildsystem=ruby
 dpkg-source -b ruby-bio-1.4.1
dpkg-source: info: using source format `3.0 (quilt)'
dpkg-source: info: building ruby-bio using existing ./ruby-bio_1.4.1.orig.tar.gz
dpkg-source: info: building ruby-bio in ruby-bio_1.4.1-2.debian.tar.gz
dpkg-source: info: building ruby-bio in ruby-bio_1.4.1-2.dsc
 debian/rules build
dh build --buildsystem=ruby --with ruby
   dh_testdir -O--buildsystem=ruby
   dh_auto_configure -O--buildsystem=ruby
   debian/rules override_dh_auto_build
make[1]: Entering directory `/tmp/buildd/ruby-bio-1.4.1'
dh_auto_build
docbook-to-man debian/br_biofetch.rb.sgml > br_biofetch.1
docbook-to-man debian/br_bioflat.rb.sgml > br_bioflat.1
docbook-to-man debian/br_biogetseq.rb.sgml > br_biogetseq.1
docbook-to-man debian/br_pmfetch.rb.sgml > br_pmfetch.1
make[1]: Leaving directory `/tmp/buildd/ruby-bio-1.4.1'
   dh_auto_test -O--buildsystem=ruby
 fakeroot debian/rules binary
dh binary --buildsystem=ruby --with ruby
   dh_testroot -O--buildsystem=ruby
   dh_prep -O--buildsystem=ruby
   dh_installdirs -O--buildsystem=ruby
   debian/rules override_dh_auto_install
make[1]: Entering directory `/tmp/buildd/ruby-bio-1.4.1'
dh_auto_install
  Entering dh_ruby --install
install -d /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/bin
install -D -m755 bin/bioruby /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/bin/bioruby
install -D -m755 bin/br_biofetch.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/bin/br_biofetch.rb
install -D -m755 bin/br_biogetseq.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/bin/br_biogetseq.rb
install -D -m755 bin/br_pmfetch.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/bin/br_pmfetch.rb
install -D -m755 bin/br_bioflat.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/bin/br_bioflat.rb
install -d /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby
install -D -m644 lib/bio/tree.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/tree.rb
install -D -m644 lib/bio/db.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db.rb
install -D -m644 lib/bio/sequence/generic.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/generic.rb
install -D -m644 lib/bio/sequence/quality_score.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/quality_score.rb
install -D -m644 lib/bio/sequence/aa.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/aa.rb
install -D -m644 lib/bio/sequence/format.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/format.rb
install -D -m644 lib/bio/sequence/format_raw.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/format_raw.rb
install -D -m644 lib/bio/sequence/common.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/common.rb
install -D -m644 lib/bio/sequence/na.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/na.rb
install -D -m644 lib/bio/sequence/adapter.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/adapter.rb
install -D -m644 lib/bio/sequence/compat.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/compat.rb
install -D -m644 lib/bio/sequence/dblink.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/dblink.rb
install -D -m644 lib/bio/sequence/sequence_masker.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence/sequence_masker.rb
install -D -m644 lib/bio/reference.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/reference.rb
install -D -m644 lib/bio/db/gff.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/gff.rb
install -D -m644 lib/bio/db/lasergene.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/lasergene.rb
install -D -m644 lib/bio/db/pdb.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb.rb
install -D -m644 lib/bio/db/go.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/go.rb
install -D -m644 lib/bio/db/fastq.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq.rb
install -D -m644 lib/bio/db/genbank/refseq.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/refseq.rb
install -D -m644 lib/bio/db/genbank/genbank_to_biosequence.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/genbank_to_biosequence.rb
install -D -m644 lib/bio/db/genbank/ddbj.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/ddbj.rb
install -D -m644 lib/bio/db/genbank/common.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/common.rb
install -D -m644 lib/bio/db/genbank/genpept.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/genpept.rb
install -D -m644 lib/bio/db/genbank/format_genbank.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/format_genbank.rb
install -D -m644 lib/bio/db/genbank/genbank.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/genbank/genbank.rb
install -D -m644 lib/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb
install -D -m644 lib/bio/db/sanger_chromatogram/scf.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/scf.rb
install -D -m644 lib/bio/db/sanger_chromatogram/abif.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/abif.rb
install -D -m644 lib/bio/db/sanger_chromatogram/chromatogram.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/sanger_chromatogram/chromatogram.rb
install -D -m644 lib/bio/db/pdb/pdb.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/pdb.rb
install -D -m644 lib/bio/db/pdb/residue.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/residue.rb
install -D -m644 lib/bio/db/pdb/chain.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/chain.rb
install -D -m644 lib/bio/db/pdb/atom.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/atom.rb
install -D -m644 lib/bio/db/pdb/utils.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/utils.rb
install -D -m644 lib/bio/db/pdb/model.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/model.rb
install -D -m644 lib/bio/db/pdb/chemicalcomponent.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/pdb/chemicalcomponent.rb
install -D -m644 lib/bio/db/fasta.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta.rb
install -D -m644 lib/bio/db/litdb.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/litdb.rb
install -D -m644 lib/bio/db/transfac.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/transfac.rb
install -D -m644 lib/bio/db/nbrf.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/nbrf.rb
install -D -m644 lib/bio/db/prosite.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/prosite.rb
install -D -m644 lib/bio/db/medline.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/medline.rb
install -D -m644 lib/bio/db/kegg/keggtab.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/keggtab.rb
install -D -m644 lib/bio/db/kegg/orthology.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/orthology.rb
install -D -m644 lib/bio/db/kegg/drug.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/drug.rb
install -D -m644 lib/bio/db/kegg/glycan.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/glycan.rb
install -D -m644 lib/bio/db/kegg/enzyme.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/enzyme.rb
install -D -m644 lib/bio/db/kegg/brite.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/brite.rb
install -D -m644 lib/bio/db/kegg/reaction.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/reaction.rb
install -D -m644 lib/bio/db/kegg/genes.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/genes.rb
install -D -m644 lib/bio/db/kegg/compound.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/compound.rb
install -D -m644 lib/bio/db/kegg/expression.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/expression.rb
install -D -m644 lib/bio/db/kegg/common.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/common.rb
install -D -m644 lib/bio/db/kegg/module.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/module.rb
install -D -m644 lib/bio/db/kegg/pathway.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/pathway.rb
install -D -m644 lib/bio/db/kegg/kgml.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/kgml.rb
install -D -m644 lib/bio/db/kegg/taxonomy.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/taxonomy.rb
install -D -m644 lib/bio/db/kegg/genome.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/kegg/genome.rb
install -D -m644 lib/bio/db/aaindex.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/aaindex.rb
install -D -m644 lib/bio/db/phyloxml/phyloxml_parser.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_parser.rb
install -D -m644 lib/bio/db/phyloxml/phyloxml.xsd /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml.xsd
install -D -m644 lib/bio/db/phyloxml/phyloxml_elements.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_elements.rb
install -D -m644 lib/bio/db/phyloxml/phyloxml_writer.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/phyloxml/phyloxml_writer.rb
install -D -m644 lib/bio/db/soft.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/soft.rb
install -D -m644 lib/bio/db/fastq/fastq_to_biosequence.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq/fastq_to_biosequence.rb
install -D -m644 lib/bio/db/fastq/format_fastq.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fastq/format_fastq.rb
install -D -m644 lib/bio/db/nexus.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/nexus.rb
install -D -m644 lib/bio/db/fasta/format_qual.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/format_qual.rb
install -D -m644 lib/bio/db/fasta/fasta_to_biosequence.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/fasta_to_biosequence.rb
install -D -m644 lib/bio/db/fasta/qual_to_biosequence.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/qual_to_biosequence.rb
install -D -m644 lib/bio/db/fasta/format_fasta.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/format_fasta.rb
install -D -m644 lib/bio/db/fasta/defline.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/defline.rb
install -D -m644 lib/bio/db/fasta/qual.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fasta/qual.rb
install -D -m644 lib/bio/db/biosql/biosql_to_biosequence.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/biosql/biosql_to_biosequence.rb
install -D -m644 lib/bio/db/biosql/sequence.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/biosql/sequence.rb
install -D -m644 lib/bio/db/fantom.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/fantom.rb
install -D -m644 lib/bio/db/newick.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/newick.rb
install -D -m644 lib/bio/db/embl/sptr.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/sptr.rb
install -D -m644 lib/bio/db/embl/uniprot.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/uniprot.rb
install -D -m644 lib/bio/db/embl/embl_to_biosequence.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/embl_to_biosequence.rb
install -D -m644 lib/bio/db/embl/swissprot.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/swissprot.rb
install -D -m644 lib/bio/db/embl/common.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/common.rb
install -D -m644 lib/bio/db/embl/format_embl.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/format_embl.rb
install -D -m644 lib/bio/db/embl/trembl.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/trembl.rb
install -D -m644 lib/bio/db/embl/embl.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/embl/embl.rb
install -D -m644 lib/bio/db/rebase.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/db/rebase.rb
install -D -m644 lib/bio/feature.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/feature.rb
install -D -m644 lib/bio/shell.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell.rb
install -D -m644 lib/bio/shell/irb.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/irb.rb
install -D -m644 lib/bio/shell/plugin/keggapi.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/keggapi.rb
install -D -m644 lib/bio/shell/plugin/flatfile.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/flatfile.rb
install -D -m644 lib/bio/shell/plugin/seq.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/seq.rb
install -D -m644 lib/bio/shell/plugin/entry.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/entry.rb
install -D -m644 lib/bio/shell/plugin/midi.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/midi.rb
install -D -m644 lib/bio/shell/plugin/psort.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/psort.rb
install -D -m644 lib/bio/shell/plugin/ncbirest.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/ncbirest.rb
install -D -m644 lib/bio/shell/plugin/soap.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/soap.rb
install -D -m644 lib/bio/shell/plugin/togows.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/togows.rb
install -D -m644 lib/bio/shell/plugin/das.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/das.rb
install -D -m644 lib/bio/shell/plugin/blast.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/blast.rb
install -D -m644 lib/bio/shell/plugin/emboss.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/emboss.rb
install -D -m644 lib/bio/shell/plugin/obda.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/obda.rb
install -D -m644 lib/bio/shell/plugin/codon.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/plugin/codon.rb
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/commands.rhtml /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/commands.rhtml
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_methods.rhtml /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_methods.rhtml
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-bg.gif /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-bg.gif
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.rhtml /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.rhtml
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_log.rhtml /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_log.rhtml
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_classes.rhtml /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_classes.rhtml
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-gem.png /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-gem.png
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/spinner.gif /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/spinner.gif
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/index.rhtml /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/index.rhtml
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_modules.rhtml /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_modules.rhtml
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/history.rhtml /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/history.rhtml
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-link.gif /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-link.gif
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_variables.rhtml /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_variables.rhtml
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.css /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.css
install -D -m644 lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/bioruby_generator.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/bioruby_generator.rb
install -D -m644 lib/bio/shell/web.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/web.rb
install -D -m644 lib/bio/shell/script.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/script.rb
install -D -m644 lib/bio/shell/demo.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/demo.rb
install -D -m644 lib/bio/shell/object.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/object.rb
install -D -m644 lib/bio/shell/interface.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/interface.rb
install -D -m644 lib/bio/shell/core.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/core.rb
install -D -m644 lib/bio/shell/setup.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/shell/setup.rb
install -D -m644 lib/bio/appl/targetp/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/targetp/report.rb
install -D -m644 lib/bio/appl/hmmer/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/hmmer/report.rb
install -D -m644 lib/bio/appl/genscan/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/genscan/report.rb
install -D -m644 lib/bio/appl/tmhmm/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/tmhmm/report.rb
install -D -m644 lib/bio/appl/blat/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blat/report.rb
install -D -m644 lib/bio/appl/clustalw.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/clustalw.rb
install -D -m644 lib/bio/appl/gcg/seq.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/gcg/seq.rb
install -D -m644 lib/bio/appl/gcg/msf.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/gcg/msf.rb
install -D -m644 lib/bio/appl/clustalw/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/clustalw/report.rb
install -D -m644 lib/bio/appl/mafft/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/mafft/report.rb
install -D -m644 lib/bio/appl/fasta.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/fasta.rb
install -D -m644 lib/bio/appl/blast/rpsblast.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/rpsblast.rb
install -D -m644 lib/bio/appl/blast/wublast.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/wublast.rb
install -D -m644 lib/bio/appl/blast/rexml.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/rexml.rb
install -D -m644 lib/bio/appl/blast/remote.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/remote.rb
install -D -m644 lib/bio/appl/blast/ddbj.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/ddbj.rb
install -D -m644 lib/bio/appl/blast/format0.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/format0.rb
install -D -m644 lib/bio/appl/blast/xmlparser.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/xmlparser.rb
install -D -m644 lib/bio/appl/blast/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/report.rb
install -D -m644 lib/bio/appl/blast/genomenet.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/genomenet.rb
install -D -m644 lib/bio/appl/blast/ncbioptions.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/ncbioptions.rb
install -D -m644 lib/bio/appl/blast/format8.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast/format8.rb
install -D -m644 lib/bio/appl/bl2seq/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/bl2seq/report.rb
install -D -m644 lib/bio/appl/muscle.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/muscle.rb
install -D -m644 lib/bio/appl/sim4/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/sim4/report.rb
install -D -m644 lib/bio/appl/meme/mast/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/meme/mast/report.rb
install -D -m644 lib/bio/appl/meme/mast.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/meme/mast.rb
install -D -m644 lib/bio/appl/meme/motif.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/meme/motif.rb
install -D -m644 lib/bio/appl/phylip/distance_matrix.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/phylip/distance_matrix.rb
install -D -m644 lib/bio/appl/phylip/alignment.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/phylip/alignment.rb
install -D -m644 lib/bio/appl/paml/yn00.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/yn00.rb
install -D -m644 lib/bio/appl/paml/codeml/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml/report.rb
install -D -m644 lib/bio/appl/paml/codeml/rates.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml/rates.rb
install -D -m644 lib/bio/appl/paml/baseml/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/baseml/report.rb
install -D -m644 lib/bio/appl/paml/codeml.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/codeml.rb
install -D -m644 lib/bio/appl/paml/yn00/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/yn00/report.rb
install -D -m644 lib/bio/appl/paml/common_report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/common_report.rb
install -D -m644 lib/bio/appl/paml/common.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/common.rb
install -D -m644 lib/bio/appl/paml/baseml.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/paml/baseml.rb
install -D -m644 lib/bio/appl/psort.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/psort.rb
install -D -m644 lib/bio/appl/psort/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/psort/report.rb
install -D -m644 lib/bio/appl/hmmer.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/hmmer.rb
install -D -m644 lib/bio/appl/mafft.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/mafft.rb
install -D -m644 lib/bio/appl/fasta/format10.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/fasta/format10.rb
install -D -m644 lib/bio/appl/blast.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/blast.rb
install -D -m644 lib/bio/appl/emboss.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/emboss.rb
install -D -m644 lib/bio/appl/spidey/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/spidey/report.rb
install -D -m644 lib/bio/appl/tcoffee.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/tcoffee.rb
install -D -m644 lib/bio/appl/sosui/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/sosui/report.rb
install -D -m644 lib/bio/appl/sim4.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/sim4.rb
install -D -m644 lib/bio/appl/pts1.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/pts1.rb
install -D -m644 lib/bio/appl/iprscan/report.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/iprscan/report.rb
install -D -m644 lib/bio/appl/probcons.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/appl/probcons.rb
install -D -m644 lib/bio/location.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/location.rb
install -D -m644 lib/bio/map.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/map.rb
install -D -m644 lib/bio/alignment.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/alignment.rb
install -D -m644 lib/bio/data/codontable.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/data/codontable.rb
install -D -m644 lib/bio/data/aa.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/data/aa.rb
install -D -m644 lib/bio/data/na.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/data/na.rb
install -D -m644 lib/bio/compat/references.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/compat/references.rb
install -D -m644 lib/bio/compat/features.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/compat/features.rb
install -D -m644 lib/bio/command.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/command.rb
install -D -m644 lib/bio/io/sql.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/sql.rb
install -D -m644 lib/bio/io/soapwsdl.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/soapwsdl.rb
install -D -m644 lib/bio/io/keggapi.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/keggapi.rb
install -D -m644 lib/bio/io/flatfile.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile.rb
install -D -m644 lib/bio/io/fastacmd.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/fastacmd.rb
install -D -m644 lib/bio/io/dbget.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/dbget.rb
install -D -m644 lib/bio/io/ncbisoap.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ncbisoap.rb
install -D -m644 lib/bio/io/pubmed.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/pubmed.rb
install -D -m644 lib/bio/io/registry.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/registry.rb
install -D -m644 lib/bio/io/ensembl.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ensembl.rb
install -D -m644 lib/bio/io/flatfile/buffer.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/buffer.rb
install -D -m644 lib/bio/io/flatfile/splitter.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/splitter.rb
install -D -m644 lib/bio/io/flatfile/indexer.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/indexer.rb
install -D -m644 lib/bio/io/flatfile/autodetection.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/autodetection.rb
install -D -m644 lib/bio/io/flatfile/index.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/index.rb
install -D -m644 lib/bio/io/flatfile/bdb.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/flatfile/bdb.rb
install -D -m644 lib/bio/io/fetch.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/fetch.rb
install -D -m644 lib/bio/io/ddbjxml.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ddbjxml.rb
install -D -m644 lib/bio/io/ncbirest.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ncbirest.rb
install -D -m644 lib/bio/io/togows.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/togows.rb
install -D -m644 lib/bio/io/das.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/das.rb
install -D -m644 lib/bio/io/biosql/config/database.yml /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/biosql/config/database.yml
install -D -m644 lib/bio/io/biosql/biosql.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/biosql/biosql.rb
install -D -m644 lib/bio/io/biosql/ar-biosql.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/biosql/ar-biosql.rb
install -D -m644 lib/bio/io/hinv.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/hinv.rb
install -D -m644 lib/bio/io/ebisoap.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/ebisoap.rb
install -D -m644 lib/bio/io/higet.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/io/higet.rb
install -D -m644 lib/bio/pathway.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/pathway.rb
install -D -m644 lib/bio/version.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/version.rb
install -D -m644 lib/bio/util/restriction_enzyme.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme.rb
install -D -m644 lib/bio/util/color_scheme/strand.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/strand.rb
install -D -m644 lib/bio/util/color_scheme/turn.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/turn.rb
install -D -m644 lib/bio/util/color_scheme/zappo.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/zappo.rb
install -D -m644 lib/bio/util/color_scheme/hydropathy.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/hydropathy.rb
install -D -m644 lib/bio/util/color_scheme/buried.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/buried.rb
install -D -m644 lib/bio/util/color_scheme/helix.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/helix.rb
install -D -m644 lib/bio/util/color_scheme/nucleotide.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/nucleotide.rb
install -D -m644 lib/bio/util/color_scheme/taylor.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme/taylor.rb
install -D -m644 lib/bio/util/sirna.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/sirna.rb
install -D -m644 lib/bio/util/restriction_enzyme/single_strand_complement.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand_complement.rb
install -D -m644 lib/bio/util/restriction_enzyme/enzymes.yaml /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/enzymes.yaml
install -D -m644 lib/bio/util/restriction_enzyme/single_strand.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand.rb
install -D -m644 lib/bio/util/restriction_enzyme/range/sequence_range.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range.rb
install -D -m644 lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/horizontal_cut_range.rb
install -D -m644 lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/vertical_cut_range.rb
install -D -m644 lib/bio/util/restriction_enzyme/range/cut_ranges.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/cut_ranges.rb
install -D -m644 lib/bio/util/restriction_enzyme/range/cut_range.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/cut_range.rb
install -D -m644 lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb
install -D -m644 lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/fragment.rb
install -D -m644 lib/bio/util/restriction_enzyme/range/sequence_range/fragments.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/range/sequence_range/fragments.rb
install -D -m644 lib/bio/util/restriction_enzyme/string_formatting.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/string_formatting.rb
install -D -m644 lib/bio/util/restriction_enzyme/double_stranded.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded.rb
install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb
install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb
install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb
install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb
install -D -m644 lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/double_stranded/cut_locations.rb
install -D -m644 lib/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb
install -D -m644 lib/bio/util/restriction_enzyme/analysis.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/analysis.rb
install -D -m644 lib/bio/util/restriction_enzyme/analysis_basic.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/analysis_basic.rb
install -D -m644 lib/bio/util/restriction_enzyme/cut_symbol.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/restriction_enzyme/cut_symbol.rb
install -D -m644 lib/bio/util/contingency_table.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/contingency_table.rb
install -D -m644 lib/bio/util/color_scheme.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/util/color_scheme.rb
install -D -m644 lib/bio/sequence.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio/sequence.rb
install -D -m644 lib/bio.rb /tmp/buildd/ruby-bio-1.4.1/debian/ruby-bio/usr/lib/ruby/vendor_ruby/bio.rb
/usr/bin/ruby1.8 -I/usr/lib/ruby/vendor_ruby /usr/lib/ruby/vendor_ruby/gem2deb/test_runner.rb
Loaded suite debian/ruby-tests
Started
............................................................................F.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................F..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Finished in 154.848664 seconds.

  1) Failure:
test_esearch_retmax_retstart(Bio::FuncTestPubmedClassMethod) [./test/functional/bio/io/test_pubmed.rb:61]:
The failure may be caused by changes of NCBI PubMed.
<["21920989",
 "21921034",
 "21921041",
 "21921046",
 "21921327",
 "21921675",
 "21922137",
 "21922275",
 "21922390",
 "21922647"]> expected but was
<["21903324",
 "21903368",
 "21903579",
 "21903592",
 "21903770",
 "21904072",
 "21904608",
 "21904639",
 "21904657",
 "21904777"]>.

  2) Failure:
test_randomize_with_hash_equiprobability(Bio::TestSequenceCommon::TestSequenceCommonRandomize)
    [./test/unit/bio/sequence/test_common.rb:286:in `randomize_equiprobability'
     ./test/unit/bio/sequence/test_common.rb:296:in `test_randomize_with_hash_equiprobability']:
test of chi2 < 21.666 failed (25.0).
<21.666> expected to be
>
<25.0>.

3127 tests, 20469 assertions, 2 failures, 0 errors
ERROR: Test "ruby1.8" failed. Exiting.
dh_auto_install: dh_ruby --install /tmp/buildd/ruby-bio-1.4.1/debian/tmp returned exit code 1
make[1]: *** [override_dh_auto_install] Error 1
make[1]: Leaving directory `/tmp/buildd/ruby-bio-1.4.1'
make: *** [binary] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit status 2
E: Failed autobuilding of package
I: unmounting /var/cache/pbuilder/ccache filesystem
I: unmounting dev/pts filesystem
I: unmounting proc filesystem
I: cleaning the build env 
I: removing directory /var/cache/pbuilder/build//11884 and its subdirectories
